View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_33 (Length: 346)
Name: NF21656_high_33
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 103 - 336
Target Start/End: Original strand, 11170726 - 11170960
Alignment:
| Q |
103 |
catgctcatcttcccatgcaaagagtcacctcttccactaccacccatggccatctaacccccaaactaaagtcctcttctcaacaacggaaatatcact |
202 |
Q |
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| T |
11170726 |
catgctcatcttcccatgcaaagagtcagctcttgcactaccacccatggccatctaacccccaaactaaagtcatcttctcaacaacagaaataccact |
11170825 |
T |
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| Q |
203 |
atcaacatataaatnnnnnnnngcgactaaatttagatcgt-aaagacctcattataaccatgaatcattcttaaatgaggtattttcactgtcaccaac |
301 |
Q |
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| T |
11170826 |
atcaacttataaataaataaaaacgactaaatttagatcgtaaaagacctcattataaccatgaatcattcttaaatgaagtattttcactgtcaccaac |
11170925 |
T |
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| Q |
302 |
tctacgaaacaatcccaccgtaacccaccattcat |
336 |
Q |
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| T |
11170926 |
tctacgaaacaatccctccttaaaccaccattcat |
11170960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 11173137 - 11173070
Alignment:
| Q |
19 |
tgttttgcatctatatattagctagctaggtttagggttaaactatagaaggaccttcttgatgtata |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11173137 |
tgttttgcatctatatattagctagctaggtttagggttaaactaaagaaggaccttcttgatgtata |
11173070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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