View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_high_42 (Length: 290)

Name: NF21656_high_42
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_high_42
NF21656_high_42
[»] chr3 (16 HSPs)
chr3 (18-206)||(17003838-17004026)
chr3 (207-275)||(32319473-32319541)
chr3 (207-285)||(50934495-50934573)
chr3 (207-276)||(10179870-10179939)
chr3 (207-274)||(47426345-47426412)
chr3 (216-276)||(33509684-33509744)
chr3 (206-274)||(44380248-44380316)
chr3 (207-276)||(10018673-10018742)
chr3 (212-285)||(47186175-47186248)
chr3 (212-285)||(31187168-31187241)
chr3 (210-276)||(37742726-37742789)
chr3 (212-276)||(42664673-42664737)
chr3 (207-276)||(10123213-10123282)
chr3 (212-271)||(34029403-34029462)
chr3 (207-285)||(35094541-35094621)
chr3 (214-274)||(39498778-39498838)
[»] chr2 (5 HSPs)
chr2 (207-276)||(34392188-34392257)
chr2 (206-285)||(7381686-7381765)
chr2 (205-285)||(21603952-21604032)
chr2 (207-274)||(37358030-37358097)
chr2 (226-285)||(23863901-23863958)
[»] chr5 (11 HSPs)
chr5 (209-276)||(19357368-19357435)
chr5 (202-276)||(9827778-9827852)
chr5 (207-276)||(11607641-11607710)
chr5 (207-285)||(39570141-39570219)
chr5 (207-276)||(1826254-1826323)
chr5 (212-285)||(38010712-38010785)
chr5 (207-285)||(13015376-13015454)
chr5 (212-276)||(13086753-13086817)
chr5 (217-285)||(33858636-33858704)
chr5 (212-285)||(29989962-29990035)
chr5 (212-276)||(13478152-13478216)
[»] chr1 (9 HSPs)
chr1 (207-274)||(29119433-29119500)
chr1 (206-285)||(32676130-32676209)
chr1 (212-276)||(2569037-2569101)
chr1 (207-265)||(46435571-46435629)
chr1 (207-274)||(25161304-25161371)
chr1 (209-274)||(7214520-7214585)
chr1 (212-285)||(8809738-8809811)
chr1 (207-276)||(8462124-8462192)
chr1 (213-261)||(16679821-16679868)
[»] chr4 (13 HSPs)
chr4 (207-285)||(12473699-12473777)
chr4 (207-285)||(12528108-12528186)
chr4 (207-285)||(33249472-33249550)
chr4 (205-285)||(35869669-35869749)
chr4 (207-285)||(21260789-21260867)
chr4 (207-285)||(55590477-55590555)
chr4 (213-276)||(52910156-52910219)
chr4 (209-267)||(22343334-22343392)
chr4 (207-285)||(51811909-51811987)
chr4 (212-285)||(52012778-52012851)
chr4 (216-271)||(49998486-49998541)
chr4 (212-285)||(9799461-9799534)
chr4 (235-271)||(35781027-35781063)
[»] chr7 (6 HSPs)
chr7 (207-285)||(35341531-35341609)
chr7 (207-285)||(48250149-48250227)
chr7 (207-277)||(40856387-40856457)
chr7 (206-262)||(40893163-40893219)
chr7 (208-271)||(48072385-48072446)
chr7 (235-271)||(48072505-48072541)
[»] scaffold0032 (1 HSPs)
scaffold0032 (207-276)||(34189-34258)
[»] chr6 (6 HSPs)
chr6 (212-276)||(11753167-11753231)
chr6 (207-273)||(1211954-1212020)
chr6 (207-285)||(5403974-5404052)
chr6 (212-285)||(34245567-34245640)
chr6 (213-267)||(11113557-11113611)
chr6 (206-275)||(32644944-32645013)
[»] scaffold0229 (1 HSPs)
scaffold0229 (207-273)||(13116-13182)
[»] chr8 (6 HSPs)
chr8 (207-285)||(41179661-41179739)
chr8 (207-285)||(24337928-24338006)
chr8 (219-276)||(18168392-18168449)
chr8 (219-276)||(18631949-18632006)
chr8 (212-285)||(1514803-1514876)
chr8 (213-264)||(32825954-32826005)
[»] scaffold0263 (2 HSPs)
scaffold0263 (213-261)||(23094-23142)
scaffold0263 (213-276)||(23206-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (206-262)||(73065-73121)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 17004026 - 17003838
Alignment:
Q  18 agaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactatccaaaaccacaaattaaaagaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  17004026 agaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactattcaaaaccacatattaaaagaata 17003927  T
Q  118 atactacctctatccatttttcttagtacatacccttaaggttaataactggggcgtccggtgttcaaaactcggaccctgcatatatt 206  Q
    ||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  17003926 atactacctctatccctttttattagtatatacctttaaggttaataagtggggtgtccggtgttcaaacctcggatcctgcatatatt 17003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 32319541 - 32319473
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctac 275  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 50934495 - 50934573
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttact 50934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 10179939 - 10179870
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 47426345 - 47426412
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 33509684 - 33509744
Alignment:
Q  216 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctacc 33509744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 44380248 - 44380316
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||| ||||||    
T  44380248 tggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 10018742 - 10018673
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| |||| | |||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 47186175 - 47186248
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| |||| ||| ||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 47186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 31187241 - 31187168
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||| |||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 31187168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 37742726 - 37742789
Alignment:
Q  210 ttccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||||||||| |||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctacc 37742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 42664673 - 42664737
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||| |||||||||||| ||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacatacc 42664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 10123282 - 10123213
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| |||  |||| |||||| || ||| |||| | |||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 34029462 - 34029403
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 271  Q
    |||||||| |||||||||||||| |||| |||||| |||||  |||| ||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccac 34029403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 35094541 - 35094621
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaat--tagagtgtgccacctacctatgctact 285  Q
    |||||||||||  |||||||||| |||| | ||||||||||||||| | |||  |||||| ||||||||||| ||| ||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttact 35094621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  214 acttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    |||||||||||||||| |||| |||| ||||||  ||||| |||||| |||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 34392257 - 34392188
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 7381686 - 7381765
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  7381686 tggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttact 7381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 21603952 - 21604032
Alignment:
Q  205 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||  |||||||| ||| ||||    
T  21603952 ttggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttact 21604032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 37358097 - 37358030
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||| ||||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 23863958 - 23863901
Alignment:
Q  226 ttaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||| ||||||||||   ||||| |||||||||||||||||||||| ||| ||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttact 23863901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 19357435 - 19357368
Alignment:
Q  209 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 9827778 - 9827852
Alignment:
Q  202 atattggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||    
T  9827778 atattggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctacc 9827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 11607710 - 11607641
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 39570219 - 39570141
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttact 39570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 1826254 - 1826323
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 38010785 - 38010712
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| |||| ||| ||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttact 38010712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 13015376 - 13015454
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttact 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 13086753 - 13086817
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacatacc 13086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 33858704 - 33858636
Alignment:
Q  217 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||| ||| ||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttact 33858636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 29989962 - 29990035
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttact 29990035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 13478216 - 13478152
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||| ||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacc 13478152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 29119500 - 29119433
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 32676130 - 32676209
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||| ||| ||||    
T  32676130 tggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttact 32676209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 2569037 - 2569101
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctacc 2569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtg 265  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 25161304 - 25161371
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| ||||||| |||||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccaccta 25161371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 7214585 - 7214520
Alignment:
Q  209 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccaccta 274  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||| ||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 8809811 - 8809738
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||| ||| ||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttact 8809738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 8462124 - 8462192
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||||  |||||| |||||||||||||||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctacc 8462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 261  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 12473699 - 12473777
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 12528108 - 12528186
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttact 12528186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 33249550 - 33249472
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttact 33249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 35869749 - 35869669
Alignment:
Q  205 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| ||| ||||    
T  35869749 ttggtttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttact 35869669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 21260789 - 21260867
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||| ||| ||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttact 21260867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 55590477 - 55590555
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||| |||||||| ||| ||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttact 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 52910219 - 52910156
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctacc 52910156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 22343334 - 22343392
Alignment:
Q  209 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtg 267  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 51811909 - 51811987
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||| ||||||||||||||||  || | ||||||  |||||||||||||||| ||||||||||| ||| ||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttact 51811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 52012778 - 52012851
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||||||| |||| ||| ||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttact 52012851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  216 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 271  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 9799534 - 9799461
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||  ||| |||||||| |||| ||| ||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttact 9799461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  235 taatggtatataccattggccaattagagtgtgccac 271  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 35341531 - 35341609
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||| ||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttact 35341609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 48250149 - 48250227
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||| ||| ||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttact 48250227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 40856387 - 40856457
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacct 277  Q
    |||| |||||| |||| |||||||||||||||| ||||||  ||||  ||||||||||||| |||||||||    
T  40856387 ggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacct 40856457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 40893219 - 40893163
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattaga 262  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| ||||||||    
T  40893219 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 40893163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 48072385 - 48072446
Alignment:
Q  208 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 271  Q
    |||||||||||||||| |||||||||| ||| |  ||||||||||  |||||||||||||||||    
T  48072385 gattccacttgtgtactattaaggtaccaatag--tataccattgatcaattagagtgtgccac 48072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  235 taatggtatataccattggccaattagagtgtgccac 271  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 34189 - 34258
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttacc 34258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 11753167 - 11753231
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 1212020 - 1211954
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacct 273  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 5404052 - 5403974
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||| ||||||||||| ||| ||||    
T  5404052 ggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttact 5403974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 34245567 - 34245640
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| |||| ||| ||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttact 34245640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 11113557 - 11113611
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtg 267  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtg 11113611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 32645013 - 32644944
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctac 275  Q
    |||||||||| |||||||||||||| ||   || ||||||| |||||||||||||  ||||| |||||||    
T  32645013 tggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctac 32644944  T

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Target: scaffold0229 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 13182 - 13116
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacct 273  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 41179739 - 41179661
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| ||| ||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttact 41179661  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 24338006 - 24337928
Alignment:
Q  207 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    |||| |||||||||||| |||||||||  ||||||||||||||| || |||||||||||||||| ||||| ||| ||||    
T  24338006 ggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttact 24337928  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 18168392 - 18168449
Alignment:
Q  219 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18168449  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 18631949 - 18632006
Alignment:
Q  219 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctacc 18632006  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 1514803 - 1514876
Alignment:
Q  212 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacctatgctact 285  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| ||||||| |||| |||| ||| ||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttact 1514876  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 32826005 - 32825954
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagt 264  Q
    ||||||||||||||||| |||  |||| | ||||||||||||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagt 32825954  T

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Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 261  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

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Target: scaffold0263; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 23263 - 23206
Alignment:
Q  213 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 276  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctacc 23206  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 73065 - 73121
Alignment:
Q  206 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattaga 262  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| ||||||||    
T  73065 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattaga 73121  T

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