View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_5 (Length: 620)
Name: NF21656_high_5
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Original strand, 4302345 - 4302944
Alignment:
| Q |
1 |
taagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgagttctaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302345 |
taagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgagttctaatt |
4302444 |
T |
|
| Q |
101 |
gaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttccttgatgggcc |
200 |
Q |
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| T |
4302445 |
gaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttccttgatgggcc |
4302544 |
T |
|
| Q |
201 |
attgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcattattgattagaacggat |
300 |
Q |
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| T |
4302545 |
attgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcattattgattagaacggat |
4302644 |
T |
|
| Q |
301 |
agaatacgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaacaagtttggtattctaaattgttagaatttaaatgggatgaaca |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4302645 |
agaatatgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaacaagtttggtattctaaattgttagaatttaaatggtatgaaca |
4302744 |
T |
|
| Q |
401 |
aactctcaatgtacctgaataacagaaagtgatatatatcatgtattaaaaaacataacaagagaaacccaagcacaaggtgtgtctagattcaataaat |
500 |
Q |
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| T |
4302745 |
aactctcaatgtacctgaataacagaaagtg----atatcatgtattaaaaaacgtaacaagagaaacccaagcacaaggtgtgtctagattcaataaat |
4302840 |
T |
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| Q |
501 |
atttcctcataacaattaaaccagatcataactgaatgtatgttaatgatcaattacttgttaaacttaaatttgacnnnnnnngagttcaattatcatg |
600 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
4302841 |
atttcttcataataattaaaccagatcataactgaatgtatgttaatgatcaattactcgttaaacttaaatttgacaaaaaaagagttcaattatcatg |
4302940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 55810707 - 55810568
Alignment:
| Q |
1 |
taagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgagttctaatt |
100 |
Q |
| |
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||||||||||||| ||||| || || |||| |||| |||||||||| |||||| |||||||||||||||||| ||||||| |||| |||| |||||| |
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| T |
55810707 |
taagcaaacatgactagcaactcacaaaggaccaaaatcaaatccagacactccttgtggaacttcattttcagtttcttccttccta-gagtgctaatt |
55810609 |
T |
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| Q |
101 |
gaagagtaggattaatttatcaaagtttcagttataaacaa |
141 |
Q |
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| T |
55810608 |
gaggagtatgattaatttcacaaggtttcagttataaacaa |
55810568 |
T |
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Back To:
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