View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_57 (Length: 233)
Name: NF21656_high_57
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 16293410 - 16293569
Alignment:
| Q |
12 |
aattgcatgtccaaatagagctgcacaaattattgtatagtgagtcggatattactttttggtgagtggtgactaatcatagatctaagataatgtcttc |
111 |
Q |
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| T |
16293410 |
aattgcatgtccaaatagagctgcacaaattattgtatagtgagtcggatattactttttggtgagttgtgactaatcatagatctaagataatgtcttc |
16293509 |
T |
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| Q |
112 |
aatcaattattcacaaactaccgtttagaaatagttgttttgtattaaagaattctgttt |
171 |
Q |
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| T |
16293510 |
aatcaattattcacaaactaccatttagaaatagttgttttgtattaaagaattctgttt |
16293569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 16293576 - 16293656
Alignment:
| Q |
153 |
gtattaaagaattctgttttgtattaaagaaatagtctgttattttttctaccaactaccagagcatatctaagtattttt |
233 |
Q |
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| T |
16293576 |
gtattaaagaattctgttttgtattaaagaaatagtctgttattttttctaccaactaccagaacatatctaagtattttt |
16293656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 50188029 - 50187984
Alignment:
| Q |
12 |
aattgcatgtccaaatagagctgcacaaattattgtatagtgagtc |
57 |
Q |
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| T |
50188029 |
aattgcatgtccaaataaagctgcacaaattatttaatagtgagtc |
50187984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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