View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_63 (Length: 225)
Name: NF21656_high_63
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 3527944 - 3527755
Alignment:
| Q |
16 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatt |
115 |
Q |
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| T |
3527944 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatcccaatgttcttgtatt |
3527845 |
T |
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| Q |
116 |
tgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggt |
205 |
Q |
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| T |
3527844 |
tgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggt |
3527755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 3532371 - 3532182
Alignment:
| Q |
16 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatt |
115 |
Q |
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| T |
3532371 |
atgaactaagaggtccaggtcaaaacatagacaattggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatt |
3532272 |
T |
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| Q |
116 |
tgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggt |
205 |
Q |
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| T |
3532271 |
tgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggt |
3532182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 3555243 - 3555054
Alignment:
| Q |
16 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatt |
115 |
Q |
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| T |
3555243 |
atgaactaagaggtccaaaacaaaacgaaaacaattggcacaagtacatgagccaaggagctacaactgttcataaagcaaatccagatgttctagtctt |
3555144 |
T |
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| Q |
116 |
tgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggt |
205 |
Q |
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| T |
3555143 |
tgtttctggcttaaattatgacactgatttaagcttcttgaagacaaagcctctaaatgttaacatagggaacaaattggtgtacgaggt |
3555054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 3549656 - 3549473
Alignment:
| Q |
16 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatt |
115 |
Q |
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|||||||| |||||||| ||||||||| || |||| | || |||||||||||||||| ||||||||| ||||||| |||||||||||||||||| || |
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| T |
3549656 |
atgaactacgaggtccaggtcaaaacaatgacaattggtacaaatacatgagccaaggagtaacaacagtccacaaagcaaatccaaatgttctagtttt |
3549557 |
T |
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| Q |
116 |
tgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgta |
199 |
Q |
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| T |
3549556 |
tgtttctggcttaaattatgacactgatttaagcttcttgaagacaaagcctctaaatgttaacataggagacaaattggtgta |
3549473 |
T |
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