View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_high_64 (Length: 220)
Name: NF21656_high_64
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 2923599 - 2923788
Alignment:
| Q |
14 |
aatgaaatggaattttgaactgtataactataaatttctcaacaacacacctgaccaatttgggccatgaaatctttgataaatggacgagtgccaatac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2923599 |
aatgaaatggaattttgaactgtataactataaatttctcaacaacacacctgaccaatttgggccatgaaatctttgataaatggacgagtgccaatac |
2923698 |
T |
|
| Q |
114 |
cagttgaccagacagccattccatatggaattgtagtaatctttcctccatttttcagctctttagtggaaatttctttcccatctacct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2923699 |
cagttgaccagacagccattccatatggaattgtagtaatctttcctccatttttcagctctttagtggaaatttctttcccatctacct |
2923788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 2908492 - 2908596
Alignment:
| Q |
14 |
aatgaaatggaattttgaactgtataactataaatttctcaacaacacacctgaccaatttgggccatg-aaatctttgataaatggacgagtgccaata |
112 |
Q |
| |
|
|||||||||||||| | || ||||||| | ||||||||||||||||||||| ||||| ||| | |||| |||||||| |||||||||| |||||||||| |
|
|
| T |
2908492 |
aatgaaatggaattctcaaatgtataattgcaaatttctcaacaacacacctaaccaacttgag-catgaaaatctttaataaatggacaagtgccaata |
2908590 |
T |
|
| Q |
113 |
ccagtt |
118 |
Q |
| |
|
|||||| |
|
|
| T |
2908591 |
ccagtt |
2908596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 36127371 - 36127238
Alignment:
| Q |
57 |
aacacacctgaccaatttgggccatgaaatctttgataaatggacgagtgccaataccagttgaccagacagccattccatatggaattgtagtaatctt |
156 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
36127371 |
aacacacctgaccaatttgtgtcataaaatcttttatgaatggacgagtgccaataccagttgaccagacagccattccatatggaatagtagtaatttc |
36127272 |
T |
|
| Q |
157 |
tcctccatttttcagctctttagtggaaatttct |
190 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
|
|
| T |
36127271 |
tcctccatttttcatttctttagtggtaatttct |
36127238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University