View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_high_68 (Length: 211)

Name: NF21656_high_68
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_high_68
NF21656_high_68
[»] chr1 (8 HSPs)
chr1 (29-190)||(16438207-16438368)
chr1 (89-186)||(16419719-16419816)
chr1 (107-196)||(16416558-16416647)
chr1 (101-196)||(16427471-16427566)
chr1 (105-196)||(16443069-16443160)
chr1 (105-196)||(16499336-16499427)
chr1 (101-196)||(16432826-16432915)
chr1 (31-80)||(16499470-16499519)
[»] chr8 (8 HSPs)
chr8 (137-186)||(2053869-2053918)
chr8 (121-186)||(10767261-10767326)
chr8 (137-180)||(2032628-2032671)
chr8 (140-186)||(2021933-2021979)
chr8 (141-186)||(1950865-1950910)
chr8 (141-186)||(2028086-2028131)
chr8 (141-186)||(2036677-2036722)
chr8 (141-186)||(2046054-2046099)
[»] chr2 (2 HSPs)
chr2 (142-186)||(28713715-28713759)
chr2 (142-186)||(28743615-28743659)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 16438368 - 16438207
Alignment:
Q  29 ttatcaatgttagcaagatctataaaaggaatagtataatttgttgcatccccggactctttggtgtgatcgggtggatgatagaacatacgagggatct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  16438368 ttatcaatgttagcaagatctataaaaggaatagtataatttgttgcatccccggactcgttggtgtgatcaggtggatgatagaacatacgagggatct 16438269  T
Q  129 tggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagt 190  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  16438268 tggtaatccctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagcttttagt 16438207  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 16419719 - 16419816
Alignment:
Q  89 ttggtgtgatcgggtggatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  16419719 ttggtgtgatcaggtggatgatagaacatatgagggatcttggtaatccctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagcttt 16419816  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 16416558 - 16416647
Alignment:
Q  107 tgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 196  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16416558 tgatagaaaatacgagggatctttgtaatccctgcatcgacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 16416647  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 16427471 - 16427566
Alignment:
Q  101 ggtggatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 196  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16427471 ggtggttgatagaaaatacgagggacctttgtaatccctgcatcaacaagtcctctaacaccaagttttgtttcatcaaaagcttttagttctttt 16427566  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 16443069 - 16443160
Alignment:
Q  105 gatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 196  Q
    ||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16443069 gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaatcttttagttctttt 16443160  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 16499427 - 16499336
Alignment:
Q  105 gatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 196  Q
    ||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  16499427 gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgagttctttt 16499336  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 16432826 - 16432915
Alignment:
Q  101 ggtggatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttttagttctttt 196  Q
    ||||| |||||||| |||||||||| |||||||||||||      |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  16432826 ggtggttgatagaagatacgagggaccttggtaatccct------acaagtcctttaacaccaagttttttttcatcaaaagctttaagttctttt 16432915  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 16499519 - 16499470
Alignment:
Q  31 atcaatgttagcaagatctataaaaggaatagtataatttgttgcatccc 80  Q
    ||||||||||||||||||||| | || |||||||||||||| ||| ||||    
T  16499519 atcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccc 16499470  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 2053918 - 2053869
Alignment:
Q  137 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  2053918 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 2053869  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 10767326 - 10767261
Alignment:
Q  121 agggatcttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||| |||  ||| |||||||||||||||| ||||||  ||||||||||||||| |||||    
T  10767326 agggatcttgttaagtcctccatcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 10767261  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 2032671 - 2032628
Alignment:
Q  137 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 180  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  2032671 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa 2032628  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 2021979 - 2021933
Alignment:
Q  140 gcatcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  2021979 gcatcaacaagtcctttgacaccatcttttgtttcatcaaatgcttt 2021933  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 1950865 - 1950910
Alignment:
Q  141 catcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||    
T  1950865 catcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 1950910  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 2028131 - 2028086
Alignment:
Q  141 catcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||    
T  2028131 catcaacaagtccttttacaccagcttttgtttcatcaaatgcttt 2028086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 2036722 - 2036677
Alignment:
Q  141 catcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||    
T  2036722 catcaacaagtcctttcacaccagattttgtttcatcaaatgcttt 2036677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 2046099 - 2046054
Alignment:
Q  141 catcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||    
T  2046099 catcaacaagtcctttcacaccagattttgtttcatcaaatgcttt 2046054  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 28713715 - 28713759
Alignment:
Q  142 atcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    ||||||||| ||||||||||||  ||||||||||||||| |||||    
T  28713715 atcaacaaggcctttaacaccagcttttgtttcatcaaatgcttt 28713759  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 28743615 - 28743659
Alignment:
Q  142 atcaacaagtcctttaacaccaagttttgtttcatcaaaagcttt 186  Q
    ||||||||| ||||||||||||  ||||||||||||||| |||||    
T  28743615 atcaacaaggcctttaacaccagcttttgtttcatcaaatgcttt 28743659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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