View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_8 (Length: 588)
Name: NF21656_high_8
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 24750026 - 24750581
Alignment:
| Q |
18 |
ctttcattcctcccacattctcaaaatctctctttatccatcaaagttacaaaattttaaccaaaaaacccaacnnnnnnnntcaattaactagttacaa |
117 |
Q |
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| T |
24750026 |
ctttcattcctcccacattctcaaaatctctctttatccatcaaagttacaaaattttaaccaaaaaacccaacaaaaaaaatcaattaactagttacaa |
24750125 |
T |
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| Q |
118 |
tgccaccaatatctggaaaactattcaccgttagtttgataagtttttggtatgcatcaaacattggtgtattactattaaacaagtaccttttaagcaa |
217 |
Q |
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| T |
24750126 |
tgccaccaatatctggaaaactattcaccgttagtttgataagtttttggtatgcatcaaacattggtgtattactattaaacaagtaccttttaagcaa |
24750225 |
T |
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| Q |
218 |
ctatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgttaagttacattgcaatatcatggatgaaggtggtgccattg |
317 |
Q |
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| T |
24750226 |
ctatggtttcaagtacccaatattcttaacactatgtcacatgatggcatgttcaatgttaagttacattgcaatatcatggatgaaggtggtgccattg |
24750325 |
T |
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| Q |
318 |
caaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgtggttggagggaatatttctctaagatatcttc |
417 |
Q |
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| T |
24750326 |
caaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgtggttggagggaatatttctctaagatatcttc |
24750425 |
T |
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| Q |
418 |
ctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatgacccttaagagggagggttggcttacttatat |
517 |
Q |
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| T |
24750426 |
ctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgacccttaagagggagggttggcttacttatat |
24750525 |
T |
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| Q |
518 |
ggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctcttt |
573 |
Q |
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| T |
24750526 |
ggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctcttt |
24750581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 393 - 566
Target Start/End: Original strand, 31330464 - 31330637
Alignment:
| Q |
393 |
gggaatatttctctaagatatcttcctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatgaccctta |
492 |
Q |
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| T |
31330464 |
gggaatatttcgcttcgatatcttcctgtgtcgtttaatcaggctattggcgcgactacgcctttctttactgccatttttgcttatattatgaccttta |
31330563 |
T |
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| Q |
493 |
agagggagggttggcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgt |
566 |
Q |
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| T |
31330564 |
agagggaggcttgtctcacttatcttacccttgttcctgttgttactggtgttgttattgctagtggggtatgt |
31330637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 31330236 - 31330303
Alignment:
| Q |
165 |
tggtatgcatcaaacattggtgtattactattaaacaagtaccttttaagcaactatggtttcaagta |
232 |
Q |
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| T |
31330236 |
tggtattcatccaacattggtgttcttctattgaacaagtatttgttaagcaactatggtttcaagta |
31330303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 563
Target Start/End: Original strand, 35016286 - 35016438
Alignment:
| Q |
411 |
tatcttcctgtgtcttttaatcaagctattggtgctacgactccnnnnnnnacggcggtttttgcttatcttatgacccttaagagggagggttggctta |
510 |
Q |
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| T |
35016286 |
tatcttcctgtgtcgtttaatcaagctatcggtgctactacgccgttttttactgcggtttttgcttatgctatgacgctcaaaagagaggcttggctta |
35016385 |
T |
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| Q |
511 |
cttatatggctcttgtacctgttgttactggtgttatgattgctagtggggta |
563 |
Q |
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| T |
35016386 |
cttatcttgctcttgttcctgttgttactggtgttatcattgctagtggggta |
35016438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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