View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_1 (Length: 748)
Name: NF21656_low_1
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 20 - 736
Target Start/End: Complemental strand, 40116366 - 40115650
Alignment:
| Q |
20 |
caattgatcttgcacgctatcatcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116366 |
caattgatcttgcacgctatcatcacatctgtcgatcagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaaga |
40116267 |
T |
|
| Q |
120 |
aaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtcttgtacaacaaagggctccaaatcagtttctgaatacctacaagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116266 |
aaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtctcgtacaacaaagggctccaaatcagtttctgaatacctacaagg |
40116167 |
T |
|
| Q |
220 |
tattaaatcaatctctgatgagcttgctgtcattaacaaacctgttgatgatgatgacttggttattcatgctctgaatgggcttggatctgagtacaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40116166 |
tattaaatcaatctctgatgagcttgctgtcatcaacaaacctgttgatgatgatgacttggttattcatgctctcaatgggcttggatctgagtacaaa |
40116067 |
T |
|
| Q |
320 |
gaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgctgagcttcatgatctacttgtggactatgaaaatgttctgcaacgtgatgatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
40116066 |
gaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgttgagcttcatgatctacttatggactatgaaaatgttctgcaacgtgaagatg |
40115967 |
T |
|
| Q |
420 |
aatctgctccagtacttactgcacatgctgcatacagaggtaaacaagctacttccaaacggggctatgcacctaatcatggcaattactcttcacccaa |
519 |
Q |
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| T |
40115966 |
aatctgctccagtacttactgcacatgctgcatacagaggtaaacaagctacttccaaacggggctatgcacctaatcatggaaattactcttcacccaa |
40115867 |
T |
|
| Q |
520 |
cagatctgtttcaccaggccagtctaagaaaacgacttgtcaattctgggacaaatctggacacactgccaaaacgtgctacaaacttcatggttatcca |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40115866 |
cagatctgtttcaccaggccagtctaagaaaacgacttgtcaattctgtgacaaatctggacacacttccaaaacgtgctacaaacttcatggttatcca |
40115767 |
T |
|
| Q |
620 |
tccaaaaatcaaccacgtccatctgcccattctgctacacatactccttttatgggtgagccagattggatccttgattccggcgctacaaaccacatca |
719 |
Q |
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| T |
40115766 |
tccaaaaatcaaccacgtccatctgcccattctgctacacatactccttttatgggtgagccagattggatccttgattccggcgctacaaaccacatca |
40115667 |
T |
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| Q |
720 |
ctaatactcttgatgat |
736 |
Q |
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||||||||||||||||| |
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| T |
40115666 |
ctaatactcttgatgat |
40115650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 379
Target Start/End: Original strand, 3016353 - 3016628
Alignment:
| Q |
104 |
tgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcgcctgtcttgtacaacaaagggctccaaatcagttt |
203 |
Q |
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||||||| ||| || ||||||||||| ||||| || ||| | ||||||||||||||||| ||||| | || | || | || || |||||||| || | |
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| T |
3016353 |
tgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcggttaactcgaacctctaaaggttccaaatccgtct |
3016452 |
T |
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| Q |
204 |
ctgaatacctacaaggtattaaatcaatctctgatgagcttgctgtcattaacaaacctgttgatgatgatgacttggttattcatgctctgaatgggct |
303 |
Q |
| |
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|||||||||| |||| || ||| |||| |||||||| ||||| |||| ||||| ||| ||||||||||||| | || |||||||||| ||||| || |
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| T |
3016453 |
ctgaatacctccaagccatcaaagcaatttctgatgaacttgcaatcatcaacaagcctattgatgatgatgatctcgtgattcatgctcccaatggcct |
3016552 |
T |
|
| Q |
304 |
tggatctgagtacaaagaagtttctgctgcccttcgtacgcgtgagaatcccatagcctttgctgagcttcatgat |
379 |
Q |
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| T |
3016553 |
tgggtccgagttcaaagagatcgctgcagcccttagaactcgggagaatgccatcgcatttgatgaacttcatgat |
3016628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 9039376 - 9039282
Alignment:
| Q |
35 |
gctatcatcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaagaaaatgtttgc |
129 |
Q |
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||||| ||||||||||||||| | |||||||| || | | |||||||| ||| | || ||||||||||||||||| |||||||| |||||||| |
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| T |
9039376 |
gctattatcacatctgtcgatcatagcatcatcacgacattaggcaatgtcaaatcctcccaacaagcttgggatactctcaagaagatgtttgc |
9039282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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