View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_10 (Length: 566)
Name: NF21656_low_10
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Complemental strand, 445051 - 444510
Alignment:
| Q |
8 |
ggacatcatcaattacagacaacttaatatgaaagccactaatcttaacnnnnnnncaacatcgattcaaatactatgatttaatcacaccttcaaatga |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
445051 |
ggacaccatcaattacagacaacttaatatgaaagccactaatcttaacaaaaaaacaacatcgattcaaatactatgatttaatcacaccttcaaatga |
444952 |
T |
|
| Q |
108 |
ggcaactcatcatcgctgtctgaatcatcacaatccttttcaaccacctgcaaggaatgataaagccgcagtcttgatgctgagagatgccgatacaaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444951 |
ggcaactcatcatcgctgtctgaatcatcacaatccttttcaaccacctgcaacgaatgataaagccgcagtcttgatgctgagagatgccgatacaaaa |
444852 |
T |
|
| Q |
208 |
tcataatatttaggctgaaaacgacctaaggaatttttataaaacatttatcgaacnnnnnnngaaaggatacctcaatgctggatgaaaagaagctgtg |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444851 |
tcataatatttaggctgaacacgacctaaggaatttttataaaacatttatcgaacaaaaaaagaaaggatacctcaatgctggatgaaaagaagctgtg |
444752 |
T |
|
| Q |
308 |
caagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcct |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444751 |
caaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcct |
444652 |
T |
|
| Q |
408 |
attgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttgaatctaaaggccaaatgatatgggaaaatatagtagtaatt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
444651 |
attgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttg-atctaaaggccaaatgatatgggaaaatatagtaataatt |
444553 |
T |
|
| Q |
508 |
cacaaacctgtagcatcttaaacatgacacgctgaagtttttg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
444552 |
cacaaacctgtagcatcttaaacatgacactctgaagtttttg |
444510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 296 - 433
Target Start/End: Original strand, 465373 - 465510
Alignment:
| Q |
296 |
aaagaagctgtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgctt |
395 |
Q |
| |
|
||||| || |||||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
465373 |
aaagaggcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaactgcat |
465472 |
T |
|
| Q |
396 |
cattctcttcctattgaaacatacattcattgaattaa |
433 |
Q |
| |
|
| ||| ||||||||| ||| | |||| |||||||||| |
|
|
| T |
465473 |
ctttcgcttcctattcaaaaacacatgaattgaattaa |
465510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 443539 - 443455
Alignment:
| Q |
305 |
gtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
389 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
443539 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaa |
443455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 544
Target Start/End: Complemental strand, 442754 - 442711
Alignment:
| Q |
501 |
agtaattcacaaacctgtagcatcttaaacatgacacgctgaag |
544 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
442754 |
agtaattgacaaacctgtagcatcttaaacataacactctgaag |
442711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University