View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_12 (Length: 542)
Name: NF21656_low_12
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 25627722 - 25627522
Alignment:
| Q |
19 |
gttctgctgcgacaaaaataaattttgaatgaattgatattataaaattgattgtacgtggttaaatatgaggagnnnnnnnnnncagaatgaagagagt |
118 |
Q |
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| T |
25627722 |
gttctgttgtgagaaaaataaattttgtctaaattgattttataaaattgattgt----ggttaaatatgaggag-----------agaatgaagagagt |
25627638 |
T |
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| Q |
119 |
tatgtttttgtattgaataatagttatgattcaagatattgatatgagatatatcaactaattacaaactatttataggctaagtgagataacttggtcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| | | |
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| T |
25627637 |
tatgtttttgtattgaataatagttatgattcaagatattgatatgagatatattaactgattacaaactatttataggcttagtgagataactttcttc |
25627538 |
T |
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| Q |
219 |
acaagttaaccaacta |
234 |
Q |
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||||||||||||||| |
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| T |
25627537 |
ccaagttaaccaacta |
25627522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 25620998 - 25621070
Alignment:
| Q |
471 |
ataacttgctatttcctatacgcagta-cggctcattttttctactgaaagaggcatctattgaatgacactt |
542 |
Q |
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| T |
25620998 |
ataacttgctatttcctataagcagtatcggctcattgtttctactgaaagaggcatctattgaatgacactt |
25621070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 25636448 - 25636488
Alignment:
| Q |
385 |
tgacaatcaaatcactgttgcttttagtcatattctagaac |
425 |
Q |
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| T |
25636448 |
tgacaatcaaatcactgttgcttttagtcatattctagaac |
25636488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 25619795 - 25619741
Alignment:
| Q |
35 |
aataaattttgaatgaattgatattataaaattgattgtacgtggttaaatatgaggag |
93 |
Q |
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| T |
25619795 |
aataaattttgcatgaattgattttataaaattgat----cgtggttaaatatgaggag |
25619741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 25624660 - 25624619
Alignment:
| Q |
29 |
gacaaaaataaattttgaatgaattgatattataaaattgat |
70 |
Q |
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| T |
25624660 |
gacaaaaataaattatgaatgaattgattttataaaattgat |
25624619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 19247761 - 19247805
Alignment:
| Q |
126 |
ttgtattgaataatagttatgattcaagatattgatatgagatat |
170 |
Q |
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| T |
19247761 |
ttgtattgaataatggttatgatacaagatattgatatgtgatat |
19247805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 25621122 - 25621089
Alignment:
| Q |
269 |
aaaaatgtagaaattagcttaaaaatcataatac |
302 |
Q |
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|
| T |
25621122 |
aaaaatgtagaaattagcttaaaaatcatcatac |
25621089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 48575561 - 48575520
Alignment:
| Q |
30 |
acaaaaataaattttgaatgaattgatattataaaattgatt |
71 |
Q |
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|||||||| |||||||||||||||||| || ||||||||||| |
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| T |
48575561 |
acaaaaattaattttgaatgaattgattttgtaaaattgatt |
48575520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3245555 - 3245507
Alignment:
| Q |
23 |
tgctgcgacaaaaataaattttgaatgaattgatattataaaattgatt |
71 |
Q |
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|||||||| |||||| | |||||||||||||||| ||||||||||||| |
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| T |
3245555 |
tgctgcgaaaaaaattagttttgaatgaattgattctataaaattgatt |
3245507 |
T |
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