View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_15 (Length: 481)
Name: NF21656_low_15
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 291 - 464
Target Start/End: Complemental strand, 4679832 - 4679659
Alignment:
| Q |
291 |
cataatctagtaaatattgcaattaattaccatgcaggagctcnnnnnnnctccccttcttttggtatctcaccaacatatctatctgaattaatttcat |
390 |
Q |
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| T |
4679832 |
cataatctagtaaatattgcaattaattaccatgcaggagctctttttttctccccttcttttggtatctcaccaacatatctatctgaattaatttcat |
4679733 |
T |
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| Q |
391 |
atttgtaagttggtgcaaagtttatcaacccttctttccatccatcaaatacatgcccaacacgcaattcattg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4679732 |
atttgtaagttggtgcaaagtttatcaacccttctttccatccatcaaatacatgcccaacacgcaattcattg |
4679659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 4680009 - 4679897
Alignment:
| Q |
114 |
aaccaagaaaattgaactaactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4680009 |
aaccaagaaaattgaactaactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattcga |
4679910 |
T |
|
| Q |
214 |
tcacacctgcatg |
226 |
Q |
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| T |
4679909 |
tcacacctgcatg |
4679897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 4680099 - 4680218
Alignment:
| Q |
1 |
agatggtcaatttttctaatgaagaaaaattaattgaacattggtatcagataa----atattaagcattttgtgaattatttgagtcagggggaggcaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4680099 |
agatggtcaatttttctaatgaagaaaaattaattgaacattggtatcaaataaataaatattaagcattttgtgaattatttgagtcagggggaggcaa |
4680198 |
T |
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| Q |
97 |
tgagatagtcatataataac |
116 |
Q |
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|||||||||||||||||||| |
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| T |
4680199 |
tgagatagtcatataataac |
4680218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 40775046 - 40775158
Alignment:
| Q |
113 |
taaccaagaaaattgaactaactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattct |
212 |
Q |
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|||||||||| |||||||||||||||| ||||||||| |||| | ||||||||| || ||| || |||||||||||||||||||| ||||||||||| | |
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| T |
40775046 |
taaccaagaagattgaactaactggtcgatgatctgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcg |
40775145 |
T |
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| Q |
213 |
atcacacctgcat |
225 |
Q |
| |
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||||||||||||| |
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|
| T |
40775146 |
atcacacctgcat |
40775158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 40768415 - 40768526
Alignment:
| Q |
114 |
aaccaagaaaattgaactaactggtctatgatctgagagcttaatttctgcacgttcataatttagttgctttattccttttcctagccacaatattcta |
213 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||| | ||||||||| | ||| ||||||||||||||||||||||| ||||||||||| | | |
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| T |
40768415 |
aaccaagaagattgaactaactggtcgatgatctgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcga |
40768514 |
T |
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| Q |
214 |
tcacacctgcat |
225 |
Q |
| |
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|||||||||||| |
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| T |
40768515 |
tcacacctgcat |
40768526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 445
Target Start/End: Original strand, 40775262 - 40775348
Alignment:
| Q |
359 |
ctcaccaacatatctatctgaattaatttcatatttgtaagttggtgcaaagtttatcaacccttctttccatccatcaaatacatg |
445 |
Q |
| |
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|||||| |||||| ||||||| |||| |||||| |||||||| |||| |||||||||| ||| ||||||||||| ||||||||||| |
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| T |
40775262 |
ctcacccacatatttatctgagttaacttcatacttgtaagtaggtgggaagtttatcagcccctctttccatccttcaaatacatg |
40775348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 40768652 - 40768716
Alignment:
| Q |
381 |
ttaatttcatatttgtaagttggtgcaaagtttatcaacccttctttccatccatcaaatacatg |
445 |
Q |
| |
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|||| |||||||||||| || |||| |||||||| ||||| ||||||||||| ||||||||||| |
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| T |
40768652 |
ttaaattcatatttgtatgtgggtgggaagtttattaacccctctttccatccctcaaatacatg |
40768716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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