View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_17 (Length: 478)
Name: NF21656_low_17
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Original strand, 32728937 - 32729386
Alignment:
| Q |
11 |
atcatcaccaactgtgtaaaatggcaaaagtgcaatggaacnnnnnnnngg-gagagataaaaatatcttgcaatgcactataggaggagggttgaaatt |
109 |
Q |
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| T |
32728937 |
atcatgaccaactgtgtaaaatggcaaaagtgcaatggaacaaaaaaaaggagagagataaaaatatcttgcaatgcactataggaggagtgttgatatt |
32729036 |
T |
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| Q |
110 |
atttattaattacgatgatcgatgtcctcacacaacatatagaaaacatcaaaatgaaagctatgtttagtttaaaagtttaattttaaccacacatacg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729037 |
atttattaattacgatgatcgatgtcctcacacaacatatagaaaacatcaaaatgaaagctatgtttagtttaaaagtttaattttaaccacacatacg |
32729136 |
T |
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| Q |
210 |
atacattacgaacaagagatacaagaacttcactatctctctatatcaaacgaaaatgttaaaataaagtttgtcgtgcatatcctactgcctttaacta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729137 |
atacattacgaacaagagatacaagaacttcactatctc--tatatcaaacgaaaatgttaaaataaagtttgtcgtgcatatcctactgcctttaacta |
32729234 |
T |
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| Q |
310 |
tattgtaaccgtccgtatagtactaggcaccatctcaatggctgagattctcttgattacacgtcattactttgggaatgtttgctcttacgccattgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729235 |
tattgtaaccgtccgtatagtactaggcaccatctcaatggctgagattctcttgattacacgtcattactttgggaatgtttgctcttacgccattgct |
32729334 |
T |
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| Q |
410 |
caacgtttccaaggtaattccatttggaagttcaaggtttgtatttgaggaa |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729335 |
caacgtttccaaggtaattccatttggaagttcaaggtttgtatttgaggaa |
32729386 |
T |
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