View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_low_18 (Length: 475)

Name: NF21656_low_18
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_low_18
NF21656_low_18
[»] chr1 (32 HSPs)
chr1 (18-461)||(9096850-9097294)
chr1 (18-461)||(9105032-9105475)
chr1 (126-464)||(9082577-9082915)
chr1 (43-458)||(9056212-9056627)
chr1 (124-461)||(8964244-8964581)
chr1 (152-461)||(8999423-8999732)
chr1 (124-458)||(8874112-8874446)
chr1 (123-461)||(9142912-9143250)
chr1 (165-461)||(9152465-9152761)
chr1 (145-276)||(8931851-8931982)
chr1 (145-256)||(9433086-9433197)
chr1 (145-251)||(9486443-9486549)
chr1 (145-242)||(9454087-9454184)
chr1 (168-276)||(8955796-8955904)
chr1 (166-266)||(9399403-9399503)
chr1 (168-276)||(8920469-8920577)
chr1 (171-275)||(8941793-8941897)
chr1 (178-254)||(9234310-9234386)
chr1 (169-242)||(9255288-9255361)
chr1 (125-242)||(9318550-9318667)
chr1 (125-242)||(9319635-9319752)
chr1 (125-242)||(9349952-9350069)
chr1 (178-446)||(9384008-9384279)
chr1 (327-449)||(9399567-9399689)
chr1 (385-438)||(9098313-9098366)
chr1 (402-458)||(9318334-9318390)
chr1 (402-458)||(9319912-9319968)
chr1 (409-458)||(9350236-9350285)
chr1 (327-368)||(9432971-9433012)
chr1 (402-443)||(11005081-11005122)
chr1 (402-443)||(11033191-11033232)
chr1 (391-443)||(9234118-9234170)
[»] chr6 (1 HSPs)
chr6 (392-458)||(15927240-15927306)
[»] chr3 (1 HSPs)
chr3 (402-446)||(9159602-9159646)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 9097294 - 9096850
Alignment:
Q  18 agtattctctaatagaggattactcatgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttggtctaagttggttgtttcacctctt 117  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9097294 agtattctctaatagaggattactcatgttttcctccaaatcgctagaactaatgaagtcactggatgttgtttggtctaagttggttgtttcacctctt 9097195  T
Q  118 gaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9097194 gaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccgtcaagcatttcaactactttactcattgaggggcgat 9097095  T
Q  218 cattcggcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctc 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9097094 catttggcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctc 9096995  T
Q  318 -ttttctaagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaa 416  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9096994 tttttctaagttgatcataaatccaaaaggggaaatatatctaacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaa 9096895  T
Q  417 aagcatcccaaagctataaacatcagccttataggaaactccccc 461  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  9096894 aagcatcccaaagctataaacatcagctttataggaaactccccc 9096850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 9105475 - 9105032
Alignment:
Q  18 agtattctctaatagaggattactcatgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttggtctaagttggttgtttcacctctt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||| ||||||||||| |||||    
T  9105475 agtattctctaatagaggattactcatgttttcccctgaatcgctagaactaatgaaatcacctgatgttgtttggtcgaagctggttgtttcatctctt 9105376  T
Q  118 gaaattgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  9105375 gaaattgtttcatctggatacatggtgggctctggaggcatttctatgcgttcaatatttccttcaagcatttcaactactttactcattgaggggcgat 9105276  T
Q  218 cattcggcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctc 317  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9105275 cattcggcttcagttgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttctatatcgatttcttcctc 9105176  T
Q  318 ttttctaagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaa 417  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9105175 ttttctaagttgatcataaatccaaaagggaaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaa 9105076  T
Q  418 agcatcccaaagctataaacatcagccttataggaaactccccc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9105075 agcatcccaaagctataaacatcagccttataggaaactccccc 9105032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 126 - 464
Target Start/End: Complemental strand, 9082915 - 9082577
Alignment:
Q  126 ttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggc 225  Q
    |||||||||||||||||| || |||||||||||||| |   |||||||||||||||||||||| || |||||| || |||| || || |||||||| ||     
T  9082915 ttcatctggatacatggttggttctggaggcatttcaagagtttcaatatctccttcaagcatctccactactctactcatcgaaggacgatcatttggt 9082816  T
Q  226 ttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaa 325  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||  || |||||| || || |||||| | | ||| | ||    
T  9082815 ttcaattgtatacaccaaagagcgaccatgatcattttctttactattttcatatcctcttctacgacattttctatttctatttctccttgtttgccaa 9082716  T
Q  326 gttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccc 425  Q
    |||||||||| ||||||||||| ||||| |  || |||||||| | ||| ||||| || |||||||| ||||||| ||||||||||||||||||||||||    
T  9082715 gttgatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatccc 9082616  T
Q  426 aaagctataaacatcagccttataggaaactccccctat 464  Q
    ||| ||||||||||||||||| || || |||||||||||    
T  9082615 aaaactataaacatcagccttgtacgacactccccctat 9082577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 43 - 458
Target Start/End: Original strand, 9056212 - 9056627
Alignment:
Q  43 atgttttcccccgaatcgctagaactaatgaagtcactggatgttgtttggtctaagttggttgtttcacctcttgaaattgtttcatctggatacatgg 142  Q
    |||||||||||   ||| |||||||||||||||||||| |||  | |||||||  |||||||||||||| |   ||||||  |||||||||||||||  |    
T  9056212 atgttttccccaatatcactagaactaatgaagtcacttgatactctttggtcggagttggttgtttcatccgatgaaatcatttcatctggatacaaag 9056311  T
Q  143 tgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacacca 242  Q
    | ||||| | ||||||||| | | |||||||||||||||||||||| || ||||||||| |||| ||||||||||| || || || | ||||||||||||    
T  9056312 ttggctccgaaggcatttcaaggttttcaatatctccttcaagcatctccactactttactcatggaggggcgatcgtttgggttaatttgtatacacca 9056411  T
Q  243 aagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaagttgatcataaatccaa 342  Q
    |||||| ||||||| |||||||||||| ||||| |||||||||||||  | || ||| |  || |||||| ||||||||  |||||||||||||||||||    
T  9056412 aagagcgaccatgaccatcttctttactatttttatatcctcctctgtaacatcttctagttctatttctgcctctttttgaagttgatcataaatccaa 9056511  T
Q  343 aaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcag 442  Q
    ||||| |||||   ||| ||||||||   |||||  |  || | |||||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||    
T  9056512 aagggaaaataatgctggcttgaatgcgctgcatgtgggttcatgtttttcctcttgcttgccatttccatcaaaagcataccaaaactataaacatcag 9056611  T
Q  443 ccttataggaaactcc 458  Q
    ||||||| || |||||    
T  9056612 ccttatacgacactcc 9056627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 124 - 461
Target Start/End: Original strand, 8964244 - 8964581
Alignment:
Q  124 gtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcg 223  Q
    ||||||| |||||| | | | |||| |||||||||||| | |||||||| ||||||||| ||||| || ||||| || ||||||||||||||||||   |    
T  8964244 gtttcatgtggataaaggattggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactaccttgttcattgaggggcgatcaactg 8964343  T
Q  224 gcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttct 323  Q
    | ||||| |||||||||||||| || || |||||||||||||||||  ||||| | |||||||||| || || ||| || || |||||| | |||| ||     
T  8964344 gtttcaactgtatacaccaaagtgcgactatgatcatcttctttactgttttcttttcctcctctgtgacatcttctatttctatttctccttcttgtcc 8964443  T
Q  324 aagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatc 423  Q
    || ||||||||||||||| || || ||||| | |||||||||||| |  || | ||  || |||||||| || || ||||||||||||||||||||||||    
T  8964444 aaattgatcataaatccataaaggaaaataaagctgacttgaatgctccgcttgggcatttaggtttttccttttacctgccatctccatcaaaagcatc 8964543  T
Q  424 ccaaagctataaacatcagccttataggaaactccccc 461  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8964544 ccaaagctataaacatcagccttataggacactccccc 8964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 152 - 461
Target Start/End: Original strand, 8999423 - 8999732
Alignment:
Q  152 gaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaac 251  Q
    |||||||||| | |||||| | ||||||||| ||||| || ||||||||  ||||||||||||||||||  ||  ||||||||||||||||||| || ||    
T  8999423 gaggcatttcaaggctttctacatctccttcgagcatctccactactttgctcattgaggggcgatcatctggtgtcaattgtatacaccaaagtgcgac 8999522  T
Q  252 catgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaagttgatcataaatccaaaaggggaaa 351  Q
     ||||||||||||||||| |||||| | || ||||||| || || ||| || || |||||| |||||| || || ||||||||||||||| || || |||    
T  8999523 tatgatcatcttctttactattttcttttcgtcctctgggacatcttctatttctatttctccctcttgtccaaattgatcataaatccataaaggaaaa 8999622  T
Q  352 tatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagccttatagg 451  Q
    || | |||||||||||| |  || | |   || |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8999623 taaagctgacttgaatgctccgcttggacatttaggtttttccttttacctgccatctccatcaaaagcatcccaaagctataaacatcagccttataag 8999722  T
Q  452 aaactccccc 461  Q
    | ||||||||    
T  8999723 acactccccc 8999732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 124 - 458
Target Start/End: Complemental strand, 8874446 - 8874112
Alignment:
Q  124 gtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcg 223  Q
    ||||||| |||||| | ||| |||| |||||||||||| | |||||||| ||||||||| ||||| || ||||| ||  ||||||| ||||||||||  |    
T  8874446 gtttcatgtggataaagggttggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactaccttgatcattgaagggcgatcatctg 8874347  T
Q  224 gcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttct 323  Q
    | |||||||||||||||||||| || || ||||||||||||||||| |||||| | ||||||||||  | || ||| || || |||||| | || | ||     
T  8874346 gtttcaattgtatacaccaaagtgccactatgatcatcttctttactattttcttttcctcctctgtcacatcttctatttctatttctccttcatgtcc 8874247  T
Q  324 aagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatc 423  Q
    || ||||||||||||||| || || ||||| | |||||||||||| |  || | ||  || |||||||| || || ||||||||| ||||||||||||||    
T  8874246 aaattgatcataaatccataaaggaaaataaagctgacttgaatgctcagcttgggcatttaggtttttccttttacctgccatcaccatcaaaagcatc 8874147  T
Q  424 ccaaagctataaacatcagccttataggaaactcc 458  Q
    ||||| ||||||||||||||||||||||| |||||    
T  8874146 ccaaaactataaacatcagccttataggacactcc 8874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 123 - 461
Target Start/End: Complemental strand, 9143250 - 9142912
Alignment:
Q  123 tgtttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattc 222  Q
    |||||||| |||||| ||| | |||| |||||||||||| | |||||||| ||||||||| ||||| || |||||||| ||||||||||||||||||       
T  9143250 tgtttcatgtggataaatgattggctttggaggcatttcaaggctttcaacatctccttcgagcatctccactactttgttcattgaggggcgatcagct 9143151  T
Q  223 ggcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttc 322  Q
    || |||||||||||||||||||| ||||| ||||||||||||||||  |||||  | |||||||| | || || ||| || || |||||| | |||| |     
T  9143150 ggtttcaattgtatacaccaaagtgcaactatgatcatcttctttagtattttattttcctcctccgtgacatcttctatttctatttctccttcttgtg 9143051  T
Q  323 taagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcat 422  Q
     || ||||||||||||||| || || || || |  || |||||||  |  |||| ||  || ||||||||||| || | |||||||||||||||||||||    
T  9143050 caaattgatcataaatccataaaggaaagtaaagttggcttgaatactccgcatgggcatttaggttttttcttttacttgccatctccatcaaaagcat 9142951  T
Q  423 cccaaagctataaacatcagccttataggaaactccccc 461  Q
    ||| || ||||||||||| ||||||||||| ||||||||    
T  9142950 cccgaaactataaacatcggccttataggacactccccc 9142912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 165 - 461
Target Start/End: Complemental strand, 9152761 - 9152465
Alignment:
Q  165 gctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttc 264  Q
    ||||||||||||| |||||||||| |  ||||||||  |||||||||| | |||||  || |||||||||||||||||||| ||||| |||||||||||     
T  9152761 gctttcaatatcttcttcaagcatctacactactttgctcattgagggacaatcatatggtttcaattgtatacaccaaagtgcaactatgatcatcttt 9152662  T
Q  265 tttacaattttcatatcctcctctgagatattttccatatcgatttcttcctcttttctaagttgatcataaatccaaaaggggaaatatatctgacttg 364  Q
    ||||| |||||  | |||||||||| || || ||| || || || ||| | |||| || || ||||| |||||| ||||| || || || |  |||||||    
T  9152661 tttactattttattttcctcctctgtgacatcttctatttctatctctccttcttgtccaaattgattataaattcaaaacggaaagtaaagttgacttg 9152562  T
Q  365 aatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactccccc 461  Q
    |||| | | | | ||  || | |||||| || || | || |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  9152561 aatgctcttcttcggaatttaagtttttgcttttacttgtcatctccatcaaaagcatcccaaaactataaacatcggccttataggacactccccc 9152465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 8931851 - 8931982
Alignment:
Q  145 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaa 244  Q
    |||| |||||| ||||| |||  |||||||||||||||||||||||| | |||| | | |||||| || |||||| | || ||||||||||||||||| |    
T  8931851 ggctttggaggaatttcaatgtcttcaatatctccttcaagcatttctattactctgtccattgaaggacgatcaatagggttcaattgtatacaccaca 8931950  T
Q  245 gagcaaccatgatcatcttctttacaattttc 276  Q
    ||||||  |||| ||||||||| ||| |||||    
T  8931951 gagcaattatgaacatcttcttcacatttttc 8931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 9433197 - 9433086
Alignment:
Q  145 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaa 244  Q
    |||| |||||||||||| ||  |||||||||||||||||||||| || |||||||| |||||||| || ||||||   || ||||| |||||||||||||    
T  9433197 ggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcattgaaggacgatcaacgggtttcaactgtatacaccaaa 9433098  T
Q  245 gagcaaccatga 256  Q
    | ||||| ||||    
T  9433097 gtgcaactatga 9433086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 9486549 - 9486443
Alignment:
Q  145 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaa 244  Q
    |||| |||||| ||||| ||  |||||||||||||||||||||| || |||||||| |||||||| || |||||| | || ||||| |||||||||||||    
T  9486549 ggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaa 9486450  T
Q  245 gagcaac 251  Q
    | |||||    
T  9486449 gtgcaac 9486443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 9454184 - 9454087
Alignment:
Q  145 ggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacacca 242  Q
    |||| |||||||||||| ||  |||||||||||||||||||||| || |||||||| |||||||| || |||||| | || ||||| |||||||||||    
T  9454184 ggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcattgaaggacgatcaatgggtttcaactgtatacacca 9454087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 8955796 - 8955904
Alignment:
Q  168 ttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttcttt 267  Q
    |||||||||||||||||||||||| | |||| | | |||||| || |||||| | || ||||||||||||||||| |||||||  |||| |||||||||     
T  8955796 ttcaatatctccttcaagcatttctattactctgtccattgaaggacgatcaatagggttcaattgtatacaccacagagcaattatgaacatcttcttc 8955895  T
Q  268 acaattttc 276  Q
    ||| |||||    
T  8955896 acatttttc 8955904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 9399403 - 9399503
Alignment:
Q  166 ctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttct 265  Q
    ||||||||||| ||||||||||| || |||||||| |||||||| || |||||| | || ||||| |||||||||||||| ||||| |||| ||| ||||    
T  9399403 ctttcaatatccccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaactatgaacattttct 9399502  T
Q  266 t 266  Q
    |    
T  9399503 t 9399503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 8920469 - 8920577
Alignment:
Q  168 ttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttcttt 267  Q
    |||||||||||||||||||||||| | |||| | | |||||| || |||||| | || ||||||||||||||||| | |||||  |||| |||||||||     
T  8920469 ttcaatatctccttcaagcatttctattactctgtacattgaaggacgatcaatagggttcaattgtatacaccatatagcaattatgaacatcttcttc 8920568  T
Q  268 acaattttc 276  Q
    ||| |||||    
T  8920569 acatttttc 8920577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 8941793 - 8941897
Alignment:
Q  171 aatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttctttaca 270  Q
    ||||||| ||||||||||||| | |||||| | |||||| || || ||||| |||||||||||||||||||| | |||||| |||| ||| ||||| |||    
T  8941793 aatatctacttcaagcatttctattactttgtccattgaaggacggtcattgggcttcaattgtatacaccacaaagcaactatgaacattttcttcaca 8941892  T
Q  271 atttt 275  Q
     ||||    
T  8941893 ttttt 8941897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 9234386 - 9234310
Alignment:
Q  178 ccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccat 254  Q
    ||||||||||| ||||||||||| |||||||| || |||||| |||| ||||| || ||||||||||| ||||||||    
T  9234386 ccttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacaccaaagtgcaaccat 9234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 9255361 - 9255288
Alignment:
Q  169 tcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacacca 242  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||||||   || |||||||||||||||||    
T  9255361 tcaatatctccttcaagcatctctatcactttattcattgagggacgatcacatggtttcaattgtatacacca 9255288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 9318667 - 9318550
Alignment:
Q  125 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcgg 224  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| |||||||| || ||||||   ||    
T  9318667 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattgaaggacgatcacatgg 9318568  T
Q  225 cttcaattgtatacacca 242  Q
     |||||||||||||||||    
T  9318567 tttcaattgtatacacca 9318550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 9319635 - 9319752
Alignment:
Q  125 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcgg 224  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| |||||||| || ||||||   ||    
T  9319635 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattgaaggacgatcacatgg 9319734  T
Q  225 cttcaattgtatacacca 242  Q
     |||||||||||||||||    
T  9319735 tttcaattgtatacacca 9319752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 9349952 - 9350069
Alignment:
Q  125 tttcatctggatacatggtgggctctggaggcatttctatgctttcaatatctccttcaagcatttcaactactttattcattgaggggcgatcattcgg 224  Q
    |||||| ||||||||  | ||||| |||||||||||| ||  ||||||||| |||||||||||| || |  ||||| |||||||| || ||||||   ||    
T  9349952 tttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcattgaaggacgatcacatgg 9350051  T
Q  225 cttcaattgtatacacca 242  Q
     |||||||||||||||||    
T  9350052 tttcaattgtatacacca 9350069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 446
Target Start/End: Original strand, 9384008 - 9384279
Alignment:
Q  178 ccttcaagcatttcaactactttattcattgaggggcgatcattcggcttcaattgtatacaccaaagagcaaccatgatcatcttctttacaattttca 277  Q
    ||||||||||| ||||||||||| |||||||  || |||||| |||| ||||| || ||||||||||  |||||||||| |||||| ||  | | |  ||    
T  9384008 ccttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgcaaccatgaacatctttttagctactgcca 9384107  T
Q  278 tatcctcctctgagatattttccata---tcgatttcttcctcttttctaagttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgc 374  Q
    | ||||| || |||| || ||||||    || || |||  ||||| | ||| |||||| || |||||||| ||||| ||   |||||||||||| | |||    
T  9384108 tttcctcttcagagacatcttccattatttcaatatctctctcttctttaaattgatcgtagatccaaaacgggaagtaatgctgacttgaatgctctgc 9384207  T
Q  375 attggttttaaggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagcctt 446  Q
    ||| |  ||    || || || || |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  9384208 attaggattcgaattcttccttttacctgccatttccatcaaaagcattccaaagctatatacatcagcctt 9384279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 449
Target Start/End: Original strand, 9399567 - 9399689
Alignment:
Q  327 ttgatcataaatccaaaaggggaaatatatctgacttgaatgttgtgcattggttttaaggttttttctcttgcctgccatctccatcaaaagcatccca 426  Q
    ||||||||||||||||||||||||||| |  ||||||||||| |  ||||  |  || |  ||| ||||| | | ||| || || ||||||||||| |||    
T  9399567 ttgatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttctcctacttgcaatttcaatcaaaagcatacca 9399666  T
Q  427 aagctataaacatcagccttata 449  Q
    |||||||| ||||||||||||||    
T  9399667 aagctatacacatcagccttata 9399689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 9098313 - 9098366
Alignment:
Q  385 aggttttttctcttgcctgccatctccatcaaaagcatcccaaagctataaaca 438  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||    
T  9098313 aggtttttcctcttgcttgctatctccatcaaaagcataccaaaactataaaca 9098366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 9318390 - 9318334
Alignment:
Q  402 tgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 458  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| |||||    
T  9318390 tgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcc 9318334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 9319912 - 9319968
Alignment:
Q  402 tgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 458  Q
    |||||| |||||||||||||| || |||||||| ||||||||||| ||||| |||||    
T  9319912 tgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcc 9319968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 9350236 - 9350285
Alignment:
Q  409 tccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 458  Q
    |||||||||||||| || |||||||| ||||||||||| ||||| |||||    
T  9350236 tccatcaaaagcattccgaagctatatacatcagccttgtaggatactcc 9350285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 9433012 - 9432971
Alignment:
Q  327 ttgatcataaatccaaaaggggaaatatatctgacttgaatg 368  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  9433012 ttgatcataaatccaaaaggggaaataaagttgacttgaatg 9432971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 11005122 - 11005081
Alignment:
Q  402 tgccatctccatcaaaagcatcccaaagctataaacatcagc 443  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  11005122 tgccatctccatcaacaacatcccaaagctatagacatcagc 11005081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 11033191 - 11033232
Alignment:
Q  402 tgccatctccatcaaaagcatcccaaagctataaacatcagc 443  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  11033191 tgccatctccatcaacaacatcccaaaactataaacatcagc 11033232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 9234170 - 9234118
Alignment:
Q  391 tttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagc 443  Q
    |||||||| |||||||| |||||||||||||| ||||| || || ||||||||    
T  9234170 tttctcttacctgccatttccatcaaaagcattccaaaactgtatacatcagc 9234118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 15927306 - 15927240
Alignment:
Q  392 ttctcttgcctgccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcc 458  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  15927306 ttctcttacttgccatttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcc 15927240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 9159602 - 9159646
Alignment:
Q  402 tgccatctccatcaaaagcatcccaaagctataaacatcagcctt 446  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||    
T  9159602 tgccatttccatcaaaagcattccaaaactataaacatcagcctt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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