View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_21 (Length: 437)
Name: NF21656_low_21
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 420
Target Start/End: Complemental strand, 29285162 - 29285009
Alignment:
| Q |
267 |
taaaaaattatacggaatattttaggattcatatttataaggtagtggggggattttaaaatctcaggattaattaggtggtatttgtatannnnnnngg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
29285162 |
taaaaaattatacggaatattttaggattcatatttataaggtagtggggggattttaaaatctcaggattaattaggtggtattcgtatatttttttgg |
29285063 |
T |
|
| Q |
367 |
gtgtaaactgggtgtattccgcgcgcaactgtgaatcccttaagaattgtggaa |
420 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
29285062 |
gtgtaaactgggtgtgctccgtgcgcaactgcgaatcccttaaaaattgtggaa |
29285009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 29245373 - 29245272
Alignment:
| Q |
83 |
taagttaggcttcaatacgtaatagtgtgtt-ggatgaactaattgaaaaatctagagaattgaaaatttctataaaacaaatagaaagctttattgtat |
181 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
29245373 |
taagttaggctccaatacataatagtgtgtttggatgaactaattgaaaaatttagagaattgaaattttctataaatcaaataaaaagctttattgtat |
29245274 |
T |
|
| Q |
182 |
tc |
183 |
Q |
| |
|
|| |
|
|
| T |
29245273 |
tc |
29245272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29285443 - 29285389
Alignment:
| Q |
77 |
tgcatataagttaggcttcaatacgtaatagtgtgttggatgaactaattgaaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29285443 |
tgcatataagttaggcttcaatacataatagtgtgttggatgaactaattgaaaa |
29285389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 29245016 - 29244920
Alignment:
| Q |
262 |
ttttgtaaaaaattatacggaatattttaggattcatatttataaggtagtgggggga-ttttaaaatctcaggattaattaggtggtatttgtata |
357 |
Q |
| |
|
||||| |||||||| ||| | ||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
29245016 |
ttttgaaaaaaattgtacaaattattttaagattcatatttataaggtaatggggggatttttgaaatctcaggatttattgggtggtatttgtata |
29244920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 29285386 - 29285354
Alignment:
| Q |
151 |
tctataaaacaaatagaaagctttattgtattc |
183 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
29285386 |
tctataaaacaaatagaaagctttattatattc |
29285354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University