View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_22 (Length: 436)
Name: NF21656_low_22
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 203 - 418
Target Start/End: Complemental strand, 35165162 - 35164947
Alignment:
| Q |
203 |
tatgtcacaatagaccccacagtctcaagaactcaacacacgttagaaccaaccaagaccacaatgacaccatcagtagttaagttgtacccaccaaaac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165162 |
tatgtcacaatagaccccacagtctcaagaactcaacacacattagaaccaaccaagaccacaatgacaccatcagtagttaagttgtacccaccaaaac |
35165063 |
T |
|
| Q |
303 |
acaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaactcaagagccgccatagtttctggcgccaaaacaacctccaaatcaac |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35165062 |
acaacacgtgttataactgcctcgtcgcataagtcataaactcggtatctaattcaagagccgccatagtttctggcgccaatacaacctccaaatcaac |
35164963 |
T |
|
| Q |
403 |
cgtcccacttccatct |
418 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35164962 |
cgtcccacttccatct |
35164947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 35165325 - 35165236
Alignment:
| Q |
39 |
atttcaaaatgcacaagttgaaacaaagattgtgaatgtgatactgcaagttgaaacaaaagaaaagaggatattaactgtcaagttgat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165325 |
atttcaaaatgcacaagttgaaacaaagattgtgaatgtgatactgcaagttgaaacaaaagaaaagaggatattaactgtcaagttgat |
35165236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University