View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_31 (Length: 359)
Name: NF21656_low_31
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 33554290 - 33554624
Alignment:
| Q |
5 |
gagaagcaaaggagtatgcagggagtggagtgaagaggccaatggaaccaagcaagaacctgatcacatcctcttgtgttaaccaacagaattcaacacc |
104 |
Q |
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| T |
33554290 |
gagaatcaatggagtatgcagggagtggagtgaagaggccaatggaaccaagcaagaacctgatcacatcctcttgtgttaaccaacagaattcaacacc |
33554389 |
T |
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| Q |
105 |
gttgtggttgttgattgttgatgacttttgttgctgttttctccttgaaattccacctctttttgtttgcaaaattggcaccacaagattctgtgctccc |
204 |
Q |
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| T |
33554390 |
gttgtggttgttgattgttgatgacttttgttgctgttttctccttgaaattccacctctttttgtttgcaaaattggcaccacaagattctgtgctccc |
33554489 |
T |
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| Q |
205 |
tggagtatgagatcaatggcttccaataagctgtatcatcaaaataacaagaatgagggttaattaattaaaattcttaatcttgatcat-----actaa |
299 |
Q |
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| T |
33554490 |
tggagtatgagatcaatggcttccaataagctgtatcatcaaaataacaagaataagggttaattaattaaaattcttaatcttgatcatactaaactaa |
33554589 |
T |
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| Q |
300 |
agcacattaaaacataatttcaagattcaaagata |
334 |
Q |
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| T |
33554590 |
agcacattaaaacataatttcaagattcaaagata |
33554624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 33541085 - 33541354
Alignment:
| Q |
21 |
tgcagggagtggagtgaagaggccaatggaaccaagcaagaacctgatcacatcctcttgtgttaaccaacagaattcaacaccgttgtggttgttgatt |
120 |
Q |
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| T |
33541085 |
tgcagggagtgcactgaagcggccaatggaaccaagcaagaacctgatcacatcctcttgtgttaaccagcagaactcaacaccattgtggctgttgatt |
33541184 |
T |
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| Q |
121 |
gttgatgacttttgttgctgttttctccttgaaattccacctctttttgtttgcaaaattggcaccacaagattctgtgctccctggagtatgagatcaa |
220 |
Q |
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| T |
33541185 |
gttaatgacttctgctgcagttttctccttgaaaggccacctttttttgtctgcgaaattggcaccacaagattttgtgccccctcaagtatgagatcaa |
33541284 |
T |
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| Q |
221 |
tggcttccaataagctgtatcatcaaaataacaagaatgagggttaattaattaaaattcttaatcttgatca |
293 |
Q |
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| T |
33541285 |
tggcatccaataagctgtaacatcaaattaacaaga--ga-cgttaattaactaaaattcttaatcttgatca |
33541354 |
T |
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