View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_35 (Length: 346)
Name: NF21656_low_35
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 40191065 - 40191372
Alignment:
| Q |
21 |
agaggtggtagatattagttcaactcaatacattgatcagaacaagccttcttctgcatatgacaacaacagcactcaagaagccatttcaatgcagaag |
120 |
Q |
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| T |
40191065 |
agaggtggtagatattagttcaactcaatacattgatcagaacaagccttcttctgcatatgacaacaacagcactcaagaagccatttcaatgcagaag |
40191164 |
T |
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| Q |
121 |
agtatggttctctatcaatcctcccaacatcaacaacttcaacagaatcagccaagatttgagaatgaaagaactcatcaaactttttcctcagtgtctt |
220 |
Q |
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| T |
40191165 |
agtatggttctgtatcaatcctcccaacatcaacaacttcaacagaatcaaccaagatttgagaatgaaagaactcatcaaactttttcctcagtgtctt |
40191264 |
T |
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| Q |
221 |
tggataacatgtttcatcaagaagtagttgaggaagcaagtaagatgagaacacatgtgtcaaatgcttcttcattggctacaagtttgagtagttcaag |
320 |
Q |
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| T |
40191265 |
tggataacatgtttcatcaagaagtagttgaggaagcaagtaagatgagaacacatgtgtcaaatgcttcttcattggctacaagtttgagtagttcaag |
40191364 |
T |
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| Q |
321 |
agaaggta |
328 |
Q |
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|||||||| |
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| T |
40191365 |
agaaggta |
40191372 |
T |
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