View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_4 (Length: 636)
Name: NF21656_low_4
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 40208065 - 40208675
Alignment:
| Q |
18 |
atgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttacctttgatagaggtatcactttgtctactataac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40208065 |
atgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttacctttgatagtggtatcactttgtctactataac |
40208164 |
T |
|
| Q |
118 |
caataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcatctacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40208165 |
caataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcatctaaatc |
40208264 |
T |
|
| Q |
218 |
aaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgtttgtgttcttgtgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208265 |
aaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgtttgtgttcttgtgt |
40208364 |
T |
|
| Q |
318 |
ttgtgccaagaggtggtgggtgtgtgttacttaattgaagtgtactatttttgtgtggattgatgaatgagtagaaatatggtatttaaggaatcaaatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208365 |
ttgtgccaagaggtggtgggtgtgtgttacttaattgaagtgtactatttttgtgtggattgatgaatgagtagaaatatggtatttaaggaatcaaatg |
40208464 |
T |
|
| Q |
418 |
tgccaatcaaattaatttttaaattactagttttttgtttgtatacgcatgtattatgaacaatgacattaattatttttactatatag-nnnnnnnngc |
516 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
40208465 |
tgccaatcaaattcatttttaaattactagttttttgtttgtatacgcatgtattatgaacaatgacattaatta-ttttactatatagtttttttttgc |
40208563 |
T |
|
| Q |
517 |
cgaccttattagcttgatttcgcttgcaagaccctaccactatgcggctactacccgacccaacgactcttaaatccttcttttttggattcacctcttt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208564 |
cgaccttattagcttgatttcgcttgcaagaccctaccactatgcggctactacccgacccaacgactcttaaatccttcttttttggattcacctcttt |
40208663 |
T |
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| Q |
617 |
gtttattttctt |
628 |
Q |
| |
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|||||||||||| |
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| T |
40208664 |
gtttattttctt |
40208675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 111 - 295
Target Start/End: Complemental strand, 21793178 - 21792997
Alignment:
| Q |
111 |
ctataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| | |||||| || || ||||||||||||| ||| | |
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| T |
21793178 |
ctataaccaataatggtcaaaacagtgacataaaggaagagaagtgttgcaacaaactcagctataagagctctataaaatgaccactttgttagctcct |
21793079 |
T |
|
| Q |
211 |
ctacatcaaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttgaacctcaacatcttt |
295 |
Q |
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| ||||| | ||| |||||||| ||||| ||||||||||| || ||||| ||| | |||||||||||||||||||||||||| |
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| T |
21793078 |
caacatctatcaatggtgctggaggtgggtcttggtaatcttttgctgagtatt---ctccttgttcttgaacctcaacatcttt |
21792997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 21793268 - 21793213
Alignment:
| Q |
18 |
atgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcaca |
73 |
Q |
| |
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||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
21793268 |
atgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcaca |
21793213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 4483487 - 4483527
Alignment:
| Q |
24 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
64 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4483487 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
4483527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
21 |
aagatcataccaccaaaagcccaagcaattcc |
52 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 31460873 - 31460935
Alignment:
| Q |
134 |
agtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagacca |
196 |
Q |
| |
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||||||||| | ||| |||| ||| ||||||||||||||||| |||||||||| |||||||| |
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| T |
31460873 |
agtgatgtacaagaacagaaaagtggctacaaactcagctatcccagctctgtagaaagacca |
31460935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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