View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_40 (Length: 320)
Name: NF21656_low_40
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_40 |
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| [»] scaffold0693 (2 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 2662 - 2615
Alignment:
| Q |
17 |
actctgaaagtagcgtacagatgtgagagcttaaagagactgacagag |
64 |
Q |
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| T |
2662 |
actctgaaagtagcgtacagatgtgagagcttaaagagactaacagag |
2615 |
T |
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Target: scaffold0693; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 2472 - 2426
Alignment:
| Q |
186 |
gtataataataaaatatacaaatttttactc--aagataaatatataa |
231 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
2472 |
gtataataataaaatatacaaa-ttttactcaaaagataaatatataa |
2426 |
T |
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