View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_41 (Length: 304)
Name: NF21656_low_41
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 47528560 - 47528835
Alignment:
| Q |
13 |
caaagggaagctatgagttcacgtgatcaaaacgataatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggtt |
112 |
Q |
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| T |
47528560 |
caaagggaagctatgagttcacgtgatcaaaatgataatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggtt |
47528659 |
T |
|
| Q |
113 |
ttggacgtgacatagtactatgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47528660 |
ttggacgtgacatagtactatgtgatcgatgtccttctgcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaac |
47528759 |
T |
|
| Q |
213 |
ttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtt |
288 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47528760 |
ttgttgttgcaaaatatgttgtcgacctaaatgtaaacaagaatgtacagataccaatgataacaatattcttgtt |
47528835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 47523248 - 47523487
Alignment:
| Q |
49 |
aatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtcctt |
148 |
Q |
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||||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||| |||||||| |
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| T |
47523248 |
aatcactgtgttgccaaagcaaattatgaagcaaataacgatactgtttgttctatttgtgatttgggaggtgacatagtactgtgtgatcaatgtcctt |
47523347 |
T |
|
| Q |
149 |
cagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaa |
248 |
Q |
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| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||| ||| | || |
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| T |
47523348 |
ctgcattccacctcagttgtttaggtctcgatcgagttccggatggcgattggttctgtccaacatgttgttgcaaaatatgctatcgacccaaatgcaa |
47523447 |
T |
|
| Q |
249 |
acaagaatgtacagataccaatgataacaatattcttgtt |
288 |
Q |
| |
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||||||||| ||||| |||||| | ||||||||||||| |
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| T |
47523448 |
gcaagaatgtgcagatggcaatgacagcaatattcttgtt |
47523487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 256
Target Start/End: Original strand, 47550362 - 47550521
Alignment:
| Q |
97 |
tgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtccttcagcattccac-ctcagttgtttagatcttgatcgagttccggatggt |
195 |
Q |
| |
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|||||| |||||||||||||| ||||| || || |||||||| |||||||||| | |||||| || | |||||||| || |||||| |||||||||| |
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| T |
47550362 |
tgttctgtttgtggttttggaggtgacttaatattatgtgatggatgtccttcttcgttccactctga-ttgtttaggtcccaatcgagatccggatggt |
47550460 |
T |
|
| Q |
196 |
gattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaat |
256 |
Q |
| |
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||||| ||||| | ||| ||||| | ||||||||||| ||| ||| | |||||||||| |
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|
| T |
47550461 |
atgtggttatgtccgagttgctgttgtagaatatgttgtcaacccaaatgcaaacaagaat |
47550521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 47523050 - 47523118
Alignment:
| Q |
13 |
caaagggaagctatgagttcacgtgatcaaaacgataatcattgtattgccgaagcaaactatgaagca |
81 |
Q |
| |
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|||||||||||| | |||||||||||| |||| |||||||||||||| |||||||| | ||||||| |
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| T |
47523050 |
caaagggaagctcttagttcacgtgatgaaaagcggaatcattgtattgctgaagcaaattctgaagca |
47523118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 44871217 - 44870964
Alignment:
| Q |
34 |
cgtgatcaaaacgataatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggttttggacgtgacatagtactat |
133 |
Q |
| |
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||||||||||| | | ||||||||||| |||||||| | |||||||||||| || | |||||||||||||||||| |||||| ||||| ||||||||| |
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| T |
44871217 |
cgtgatcaaaaggggagtcattgtattggggaagcaaattctgaagcaaataacgacaatgtttgttctatttgtggctttggaggtgacttagtactat |
44871118 |
T |
|
| Q |
134 |
gtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttg |
233 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44871117 |
gtgatcgatgtccttctgcattccaccttggttgtttaggtcttgatcgagttccagatggtgattggttctgtccaacttgttgttgcaaaatatgcta |
44871018 |
T |
|
| Q |
234 |
tcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgt |
287 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| |||||| |||||| ||||||| |
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| T |
44871017 |
tcgacccaaatgcaaacaagaatgtgcagatggcaatgaaaacaattttcttgt |
44870964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 9820319 - 9820080
Alignment:
| Q |
49 |
aatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtcctt |
148 |
Q |
| |
|
||||||||| ||| | ||| ||| | ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||| |
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| T |
9820319 |
aatcattgtgttgtcaaagaaaaatctgaagcaaataatgataatgtttgttctatttgtggttttggaggtgacttagcactatgtgatcgatgccctt |
9820220 |
T |
|
| Q |
149 |
cagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaa |
248 |
Q |
| |
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| ||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||| ||| | || |
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| T |
9820219 |
ctgcattccacctaggttgtttaggtctcaatcgagttccaattggtgaatggttctgtccaacttgttgttgcaaaatatgctatcgacccaaatgcaa |
9820120 |
T |
|
| Q |
249 |
acaagaatgtacagataccaatgataacaatattcttgtt |
288 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||||| |
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|
| T |
9820119 |
acaagaatgtaaagatcacaaggataacaatattcttgtt |
9820080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 9853661 - 9853900
Alignment:
| Q |
49 |
aatcattgtattgccgaagcaaactatgaagcaaataatgatactgtttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtcctt |
148 |
Q |
| |
|
||||||||| ||| | ||| ||| | ||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||| |
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| T |
9853661 |
aatcattgtgttgtcaaagaaaattctgaagcaaagaatgataatgtttgttctatttgtggttttggaggtgacttagcactatgtgatcgatgccctt |
9853760 |
T |
|
| Q |
149 |
cagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaa |
248 |
Q |
| |
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| |||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||| ||| | || |
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| T |
9853761 |
ctgcattccacctcggttgtttaggtctcaatcgagttccaattggtgaatggttctgtccaacttgttgttgcaaaatatgctatcgacccaaatgcaa |
9853860 |
T |
|
| Q |
249 |
acaagaatgtacagataccaatgataacaatattcttgtt |
288 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||||| |
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| T |
9853861 |
acaagaatgtaaagatcacaaggataacaatattcttgtt |
9853900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 21061975 - 21062166
Alignment:
| Q |
95 |
tttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatgg |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||| | || ||||||||||||||||||| |||||||||| | ||| ||||| ||| ||| ||||| |||| | |
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|
| T |
21061975 |
tttgttctatttgtggttttgggggtgacacaatattatgtgatcgatgtccttctgcattccaccgctgttctttaggtctcgatggagttttggatag |
21062074 |
T |
|
| Q |
195 |
tgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttg |
286 |
Q |
| |
|
||||| ||| ||||||||||| | ||||||||||||| || ||| || | |||||||| ||| || || ||||||||||||||||||| |
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|
| T |
21062075 |
tgattagtttcgtccaacttgtggctgcaaaatatgttatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttg |
21062166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 21081368 - 21081559
Alignment:
| Q |
95 |
tttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatgg |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||| | || ||||||||||||||||||| |||||||||| | ||| ||||| ||| ||| ||||| |||| | |
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| T |
21081368 |
tttgttctatttgtggttttgggggtgacacaatattatgtgatcgatgtccttctgcattccaccgctgttctttaggtctcgatggagttttggatag |
21081467 |
T |
|
| Q |
195 |
tgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttg |
286 |
Q |
| |
|
||||| ||| ||||||||||| | ||||||||||||| || ||| || | |||||||| ||| || || ||||||||||||||||||| |
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|
| T |
21081468 |
tgattagtttcgtccaacttgtggctgcaaaatatgttatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttg |
21081559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 258
Target Start/End: Complemental strand, 21080911 - 21080746
Alignment:
| Q |
93 |
tgtttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggat |
192 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||| |||||| | |||| ||| |||| ||| ||||||||| ||| ||||||||| |||| |
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| T |
21080911 |
tgtttgtcctatttttggttttggttgtgacatagtactttgtgattggtgtctttcttcattaaaccatggttgtttaggtctcaatcgagttctggat |
21080812 |
T |
|
| Q |
193 |
ggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgt |
258 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||| | |||||||||| | |||| ||||||| |
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|
| T |
21080811 |
ggtgattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgt |
21080746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 258
Target Start/End: Complemental strand, 21061518 - 21061353
Alignment:
| Q |
93 |
tgtttgttctatttgtggttttggacgtgacatagtactatgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggat |
192 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||| |||||| | |||| ||| |||| ||| ||||||||| ||| ||||||||| |||| |
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| T |
21061518 |
tgtttgtcctatttttggttttggttgtgacatagtactttgtgattggtgtctttcttcattaaaccatggttgtttaggtctcaatcgagttctggat |
21061419 |
T |
|
| Q |
193 |
ggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgt |
258 |
Q |
| |
|
|| |||||||||| || || |||||||||||||||||| | |||||||||| | |||| ||||||| |
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|
| T |
21061418 |
ggggattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgt |
21061353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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