View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_42 (Length: 292)
Name: NF21656_low_42
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 46899076 - 46898821
Alignment:
| Q |
19 |
catccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46899076 |
catccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtg |
46898977 |
T |
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| Q |
119 |
aatgattttttgatcttcatcccaatttggtggttgctgccttgtctccacctgatgtcgttcctcgttgcgaggatcaaccagctcctgccaattccgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46898976 |
aatgattttttgatcttcatcccaatttggtggttgctgccttgtctccacctgatgtcgttcctcgttgcgaggatcaaccagctcctgccaattccgc |
46898877 |
T |
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| Q |
219 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46898876 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttct |
46898821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 46863959 - 46863833
Alignment:
| Q |
20 |
atccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtga |
119 |
Q |
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||||||| || ||||||||||||||||| |||| |||||||| |||| | ||||| |||||||||| ||||| || | || ||||||||||||||| |
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| T |
46863959 |
atccctagacttagcaggatcctcatgacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtga |
46863860 |
T |
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| Q |
120 |
atgattttttgatcttcatcccaattt |
146 |
Q |
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|||| |||||||||||| ||||||||| |
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| T |
46863859 |
atgaatttttgatcttcctcccaattt |
46863833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 46890506 - 46890389
Alignment:
| Q |
18 |
tcatccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgt |
117 |
Q |
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|||||||||||| |||||||| |||||||| || |||| ||||| ||||| ||||||||||| |||||| |||| ||||| ||||| ||||| | | |
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| T |
46890506 |
tcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacagtttcattgttt |
46890407 |
T |
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| Q |
118 |
gaatgattttttgatctt |
135 |
Q |
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| T |
46890406 |
gtatgatttttttatctt |
46890389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 22691886 - 22691982
Alignment:
| Q |
44 |
atgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
140 |
Q |
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| T |
22691886 |
atgaagaaaactacacttatcatcataaggacattctttaccattgtagtatttcttgcatagccccatcttgtgaatgattttttgatcatcatcc |
22691982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 22691997 - 22692068
Alignment:
| Q |
179 |
ttcctcgttgcgaggatcaaccagctcctgccaattccgcggtggctgccttatctcatcagccccgtgagc |
250 |
Q |
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| T |
22691997 |
ttcctcgttgcgagcgccagctagctccttccgattcggcggtggctgccttatctcaccaaccccgtgagc |
22692068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 19845907 - 19845811
Alignment:
| Q |
44 |
atgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
140 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| || ||| |||||||||||||||||| | ||| |||||| |
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| T |
19845907 |
atgaagaaaaatacatgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatcc |
19845811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 9150464 - 9150390
Alignment:
| Q |
92 |
atacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaatttggtggttgctgccttgtctc |
166 |
Q |
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||||||||| |||| |||||||||| |||| ||||| | || | ||||||||||| ||||| |||||||| |||| |
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| T |
9150464 |
atacttcttgcacaacttcatcttgagaataattttctaatttccatcccaatttcgtggtggctgccttatctc |
9150390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 19845796 - 19845707
Alignment:
| Q |
179 |
ttcctcgttgcgaggatcaaccagctcctgccaattccgcggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcacc |
268 |
Q |
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|||||| ||||||||| || | || |||| ||||||| |||||||||||| |||||| || |||||||||| ||| | |||| |||||| |
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| T |
19845796 |
ttcctcattgcgaggaccagctagatccttccaattcgccggtggctgcctaatctcaccaaccccgtgagcataggtacaatgttcacc |
19845707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 9150823 - 9150755
Alignment:
| Q |
20 |
atccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccatt |
88 |
Q |
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|||||||||||||| ||| |||||| ||||| |||||| || |||||||| ||| |||||||| |||| |
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| T |
9150823 |
atccctaaacctagaagggccctcattaagaaggctacatttctcaccatagggatattcctcatcatt |
9150755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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