View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_46 (Length: 266)
Name: NF21656_low_46
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 24735807 - 24736057
Alignment:
| Q |
1 |
agcaaaacatgcaagggcacatattgagtacacaatctatgatgggatggaatggttgat---agcatggttttgggatattgttgagataatatttgca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24735807 |
agcaaaacatgcaagggcacatattgagtacacaatctatgatgggatggaatggttgatcatagcatggttttgggatattgttgagataatatttgca |
24735906 |
T |
|
| Q |
98 |
gaacaaaatcaacacttttatgttcaccggaagaagcagattgcaatggaatcattttggtacacgacattaagcttttggagggttgtcttacttccaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24735907 |
gaacaaaatcaacacttttatgttcaccggaagaagcagattgcaatggaatcattttggtacacgacattaagcttttggagggttgtcttacttccaa |
24736006 |
T |
|
| Q |
198 |
ccttgaggacaaggttgatttcgaagagcggggtaatgatacggtcataac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24736007 |
ccttgaggacaaggttgatttcgaagagcggggtaatgatacgatcataac |
24736057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 247
Target Start/End: Original strand, 30455991 - 30456194
Alignment:
| Q |
46 |
gatggaatggttgatagcatggttttgggatattgttgagataatatttgcagaacaaaatcaacacttttatgttcaccggaagaagcagattgcaatg |
145 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||||| ||| || ||| || |||||||||||||| || | ||||||| || |||| ||||||||| || |
|
|
| T |
30455991 |
gatgaaatggttgatagcttggttttggaatattgtggaggtagtatctgtggaacaaaatcaacatttgtttgttcactggcagaaacagattgcattg |
30456090 |
T |
|
| Q |
146 |
gaa-tcattttggtacacgacattaagcttttggagggttgtcttacttccaaccttgaggacaaggttgatttcgaagagc-ggggtaatgatacggtc |
243 |
Q |
| |
|
| | ||||||||||||| | |||||||||| |||||| |||||| || |||||||||||||||||||||||||||||||| | |||||||||||| || |
|
|
| T |
30456091 |
ggagtcattttggtacatggcattaagcttgtggaggcttgtctggtttacaaccttgaggacaaggttgatttcgaagagctgaggtaatgatacgatc |
30456190 |
T |
|
| Q |
244 |
ataa |
247 |
Q |
| |
|
|||| |
|
|
| T |
30456191 |
ataa |
30456194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 33329166 - 33329315
Alignment:
| Q |
17 |
gcacatattgagtacacaatctatgatgggatggaatggttgatagcatggttttgggatattgttgagataatatttgc----agaacaaaatcaacac |
112 |
Q |
| |
|
||||||| |||||| || | ||||||||||||||||| |||||||| |||||||||| |||||||||| || | | ||| |||| |||||||||| |
|
|
| T |
33329166 |
gcacatactgagtatactaactatgatgggatggaatagttgataggttggttttgggttattgttgaggtagtgtatgcagaaagaaaaaaatcaacat |
33329265 |
T |
|
| Q |
113 |
ttttatgttcaccggaagaagcagattgcaatg-gaatcattttggtaca |
161 |
Q |
| |
|
|||| || |||||||||| |||||||| || || ||||||||||||||| |
|
|
| T |
33329266 |
ttttttggtcaccggaagcagcagattacattgaaaatcattttggtaca |
33329315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 13587464 - 13587424
Alignment:
| Q |
195 |
caaccttgaggacaaggttgatttcgaagagcggggtaatg |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
13587464 |
caaccttgaggacaaggttgatttcaaagagggtggtaatg |
13587424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University