View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_low_49 (Length: 263)

Name: NF21656_low_49
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_low_49
NF21656_low_49
[»] chr2 (9 HSPs)
chr2 (19-258)||(12258724-12258967)
chr2 (52-240)||(12234489-12234677)
chr2 (52-251)||(12245586-12245785)
chr2 (52-252)||(11999195-11999395)
chr2 (52-238)||(7542028-7542214)
chr2 (54-252)||(14703196-14703394)
chr2 (97-215)||(16657742-16657860)
chr2 (93-216)||(43625236-43625359)
chr2 (94-212)||(16662214-16662332)
[»] chr4 (2 HSPs)
chr4 (55-238)||(35132259-35132442)
chr4 (97-251)||(30775041-30775195)
[»] chr7 (12 HSPs)
chr7 (141-258)||(27831144-27831261)
chr7 (93-251)||(8616470-8616628)
chr7 (93-226)||(8585927-8586060)
chr7 (124-226)||(17267753-17267855)
chr7 (140-221)||(8659182-8659263)
chr7 (150-258)||(6789294-6789402)
chr7 (127-216)||(17260065-17260154)
chr7 (140-221)||(1301279-1301360)
chr7 (96-212)||(3147092-3147208)
chr7 (196-252)||(8383200-8383256)
chr7 (103-239)||(8646678-8646814)
chr7 (129-214)||(8654276-8654361)
[»] chr5 (1 HSPs)
chr5 (83-238)||(28219720-28219875)
[»] chr8 (1 HSPs)
chr8 (93-238)||(43744618-43744763)
[»] chr1 (3 HSPs)
chr1 (146-216)||(4678831-4678901)
chr1 (124-213)||(52549264-52549353)
chr1 (136-175)||(34467049-34467088)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 12258724 - 12258967
Alignment:
Q  19 ggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttat 114  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12258724 ggaaatccaagagctttgaggagattgaaaacagcttgtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttat 12258823  T
Q  115 gtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtct 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12258824 gtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaatttggaacttttcaatgaatgcatgaagactgttgagagttgtct 12258923  T
Q  215 taccgatgctaacacggacaagagtaatgtagatgatgatgtcc 258  Q
    ||| |||||||||||||||||||||||||||||||||| |||||    
T  12258924 tacggatgctaacacggacaagagtaatgtagatgatgttgtcc 12258967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 12234677 - 12234489
Alignment:
Q  52 gtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgc 151  Q
    ||||||| |||||||||||| | ||||  |||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| | || |||||| | ||    
T  12234677 gtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggc 12234578  T
Q  152 caagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 240  Q
    ||||||||||||||| |||||||| ||| | | ||| || ||||||| |||||||||||||||||  |||||||| | |||||| ||||    
T  12234577 caagtttgaggaaatgaatatggatcttcttattgagtgtatgaagattgttgagagttgtcttagtgatgctaagatggacaaaagta 12234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 251
Target Start/End: Original strand, 12245586 - 12245785
Alignment:
Q  52 gtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgc 151  Q
    ||||||| |||||||||  |||||| | |||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| ||    
T  12245586 gtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggc 12245685  T
Q  152 caagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgat 251  Q
     |||||||||||| | ||| | || ||| | ||||| || || |||||||||||||||||| |||  ||||| || | ||||||||||| | ||||||||    
T  12245686 aaagtttgaggaattgaatttagatcttcttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgat 12245785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 252
Target Start/End: Complemental strand, 11999395 - 11999195
Alignment:
Q  52 gtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgc 151  Q
    ||||||| |||||||||  ||| || | |||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| ||    
T  11999395 gtgagagggcaaaaagaatactatcatttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggc 11999296  T
Q  152 caagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgat 251  Q
     |||||||||||| | ||| | || ||| | ||||| || || |||||||||||||||||| |||  ||||| || | ||||||||||| | ||||||||    
T  11999295 aaagtttgaggaattgaatttagatcttcttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgat 11999196  T
Q  252 g 252  Q
    |    
T  11999195 g 11999195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 7542214 - 7542028
Alignment:
Q  52 gtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgc 151  Q
    ||||||| |||||||||||||||||||  ||||||||||| ||||||||| |||||||||||| | | |||||||| |||||| | || |||||| | ||    
T  7542214 gtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggc 7542115  T
Q  152 caagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagag 238  Q
    |||||||||||| || |||||||| ||||| || || || |||| || |||||  || |||||||  |||||||| | |||||||||    
T  7542114 caagtttgaggagatgaatatggatctttttaacgagtgtatgacgattgttggaagctgtcttattgatgctaatatggacaagag 7542028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 252
Target Start/End: Complemental strand, 14703394 - 14703196
Alignment:
Q  54 gagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgcca 153  Q
    ||||| ||||||||| |||||||||  |  ||||| || ||||||||| ||||| |||||| | |  ||||||| |||||| | || |||||| | ||||    
T  14703394 gagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttatttcaatgcattgacttttcttcatcgatcaatagggcca 14703295  T
Q  154 agtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatg 252  Q
    ||||||| ||||| ||||||||  |||| ||||| ||  |||||| |||||||||||||||||  |||||||| | |||||||||||  ||||||||||    
T  14703294 agtttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgatgctaagatggacaagagtagagtagatgatg 14703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 16657742 - 16657860
Alignment:
Q  97 ttgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaa 196  Q
    ||||| |||||||||||| | | || ||||| |||||| | |||||||  |||||||||||||||||||| |||||||| ||||||||||| || |||||    
T  16657742 ttgaggtagattctttatttcagggaattgacttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaa 16657841  T
Q  197 gactgttgagagttgtctt 215  Q
     |||||||||| |||||||    
T  16657842 aactgttgagaattgtctt 16657860  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 43625359 - 43625236
Alignment:
Q  93 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca 192  Q
    ||||||||| ||||||||||||    ||| ||||| || | | | ||||||| ||||||||| ||||| |||||||||||||| |||||||| || ||      
T  43625359 actattgaggtagattctttattccgtggtattgacttcttttcatcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtt 43625260  T
Q  193 tgaagactgttgagagttgtctta 216  Q
    |||| |||||| ||||||||||||    
T  43625259 tgaaaactgttaagagttgtctta 43625236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 16662214 - 16662332
Alignment:
Q  94 ctattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcat 193  Q
    |||||||||| |||| |||||  || | |||||| || ||| | ||| ||| ||||| ||||||||| ||||| |||||||  ||||| || || || ||    
T  16662214 ctattgagattgattatttatacgaggacattgacttctctacatcactcactcgtgtcaagtttgaagaaatcaatatgggcctttttaacgagtgtat 16662313  T
Q  194 gaagactgttgagagttgt 212  Q
    ||||| |||||||||||||    
T  16662314 gaagattgttgagagttgt 16662332  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 35132442 - 35132259
Alignment:
Q  55 agagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaa 154  Q
    |||| ||||| |||||||||||||  ||||||||||| | ||||||  |||||||||||| | | ||||||||||||||| | ||||||||||| |||||    
T  35132442 agagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcatcaatcaatcgcgccaa 35132343  T
Q  155 gtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagag 238  Q
    |||||||||||| |||   || ||||| ||||| || ||||| || || ||||||||||| |  |||||||| | |||||||||    
T  35132342 gtttgaggaaatgaatgcagacctttttaatgagtgtatgaataccgtagagagttgtctcattgatgctaagatggacaagag 35132259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 30775195 - 30775041
Alignment:
Q  97 ttgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaa 196  Q
    |||||||||||  ||||| | | | |||||| |||||| | ||||||| ||||| ||||||||||||||| |||||||| ||||| ||||| || ||  |    
T  30775195 ttgagatagataatttatttcaagacattgacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataca 30775096  T
Q  197 gactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgat 251  Q
    ||||||||||||||||||||| ||| | ||    |||||||||| ||||||||||    
T  30775095 gactgttgagagttgtcttactgattcaaaggtagacaagagtagtgtagatgat 30775041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 27831144 - 27831261
Alignment:
Q  141 atcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 240  Q
    |||| |||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||| || ||  |||| | |||||||||||    
T  27831144 atcactcgtgcaaagtttgaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagta 27831243  T
Q  241 atgtagatgatgatgtcc 258  Q
     | ||||||||| |||||    
T  27831244 gtatagatgatgttgtcc 27831261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 8616628 - 8616470
Alignment:
Q  93 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca 192  Q
    ||||||||||| |||| ||||||||| ||||| ||||| ||| | ||||||| |||||  |||||||||||||| |||||||| ||||| || || || |    
T  8616628 actattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacgagtgta 8616529  T
Q  193 tgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgat 251  Q
    | |||||||||||||||||| |||  ||| |||| |  || ||||||| ||||||||||    
T  8616528 taaagactgttgagagttgttttaatgattctaagatagagaagagtagtgtagatgat 8616470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 8585927 - 8586060
Alignment:
Q  93 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca 192  Q
    |||||||| || |||| ||||||||| ||| | ||||| ||| | |||||||  |||| ||||||||||||||| |||||||| ||||| ||||| || |    
T  8585927 actattgaaattgattatttatgtgagggcgtcgatttctcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgta 8586026  T
Q  193 tgaagactgttgagagttgtcttaccgatgctaa 226  Q
    | || |||||||||||||||||||||||| ||||    
T  8586027 taaatactgttgagagttgtcttaccgattctaa 8586060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 17267855 - 17267753
Alignment:
Q  124 ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgc 223  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||  |||| |||||| ||| ||||||||  |||||||  |||||    
T  17267855 ttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgc 17267756  T
Q  224 taa 226  Q
    |||    
T  17267755 taa 17267753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 8659263 - 8659182
Alignment:
Q  140 aatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgat 221  Q
    ||||| |||||||| |||||||||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||||| ||||    
T  8659263 aatcactcgtgccaggtttgaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcgat 8659182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 6789402 - 6789294
Alignment:
Q  150 gccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatg 249  Q
    ||||||||||||||||| ||||||||  |||| ||||| || |||||||| |||||||||||||||   || ||||| | ||||||||||| |||| |||    
T  6789402 gccaagtttgaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtcttgttgacgctaagatggacaagagtattgtaaatg 6789303  T
Q  250 atgatgtcc 258  Q
    ||| |||||    
T  6789302 atgttgtcc 6789294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 17260154 - 17260065
Alignment:
Q  127 atttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctta 216  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||||| |||||  |||| |||||| ||| ||||||||  |||||||    
T  17260154 atttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggaccttttttatgagtgcatggagattgttgagaagtgtctta 17260065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 1301360 - 1301279
Alignment:
Q  140 aatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgat 221  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||||| || |  || || |||||||||||||||| ||||    
T  1301360 aatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgat 1301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 3147208 - 3147092
Alignment:
Q  96 attgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatga 195  Q
    ||||||||||||||||||| | | ||  |||| || | | | ||||||| ||||||||||||||||||||| |||||||| ||||||| ||| ||  ||     
T  3147208 attgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatcaatatggatcttttcactgagtgtttgg 3147109  T
Q  196 agactgttgagagttgt 212  Q
    | |||||| ||||||||    
T  3147108 aaactgttaagagttgt 3147092  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 8383200 - 8383256
Alignment:
Q  196 agactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatg 252  Q
    ||||||||||||| |||||||| |||||||| | | ||||||||| |||||||||||    
T  8383200 agactgttgagagctgtcttactgatgctaagatgaacaagagtagtgtagatgatg 8383256  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 8646814 - 8646678
Alignment:
Q  103 tagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgt 202  Q
    |||||||||||| | |||||||||| |||  | | ||||||| ||||||||| ||||| | ||| |||||||| || ||||  |||||  || | |||||    
T  8646814 tagattctttatttaatggcattgactttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatctgttcatcgaatgtttggaaactgt 8646715  T
Q  203 tgagagttgtcttaccgatgctaacacggacaagagt 239  Q
    ||||||||||| ||  ||||| || | ||||||||||    
T  8646714 tgagagttgtcataatgatgccaagatggacaagagt 8646678  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 8654361 - 8654276
Alignment:
Q  129 ttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtct 214  Q
    |||||| | ||||||| |||||| || ||||||||||| ||||||||  |||||||||| || || || | |||||| ||||||||    
T  8654361 ttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatattgttgacagttgtct 8654276  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 28219875 - 28219720
Alignment:
Q  83 tgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttc 182  Q
    |||||| || || |||||| |||||||||||| ||| ||||||||||| | | | ||||| | |||||| |||||||||||||| |||||||| ||||||    
T  28219875 tgttgtcgccaccattgaggtagattctttatttgaaggcattgatttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttc 28219776  T
Q  183 aatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagag 238  Q
    ||||| ||  |||| ||||||||||| ||||| || ||||| || | |||||||||    
T  28219775 aatgagtgtttgaaaactgttgagaggtgtctcactgatgccaatatggacaagag 28219720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 43744763 - 43744618
Alignment:
Q  93 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca 192  Q
    ||||||||| |||||||||||| ||| ||||||||||| | | |  |||||| |||| | |||||||||||||| |||||||| || ||||| || ||      
T  43744763 actattgaggtagattctttatttgagggcattgatttctttacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtgtt 43744664  T
Q  193 tgaagactgttgagagttgtcttaccgatgctaacacggacaagag 238  Q
    |||| | |||||||||||||||||| ||||| || | |||||||||    
T  43744663 tgaaaattgttgagagttgtcttactgatgccaagatggacaagag 43744618  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 4678831 - 4678901
Alignment:
Q  146 tcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctta 216  Q
    ||||||||||||||||||||| |||||||| |||||||| || || ||| | |||||| ||||||||||||    
T  4678831 tcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctta 4678901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 52549264 - 52549353
Alignment:
Q  124 ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtc 213  Q
    ||||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||| || || || ||||||| |||||| |||||||    
T  52549264 ttgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc 52549353  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 34467049 - 34467088
Alignment:
Q  136 cgtcaatcaatcgtgccaagtttgaggaaataaatatgga 175  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  34467049 cgtcaatcactcgtgccaagtttgaggaaatcaatatgga 34467088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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