View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_52 (Length: 256)
Name: NF21656_low_52
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 35072018 - 35072262
Alignment:
| Q |
1 |
tttgtatcgtgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacat |
100 |
Q |
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| T |
35072018 |
tttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacat |
35072117 |
T |
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| Q |
101 |
cagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagtagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072118 |
cagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagtagagaa |
35072217 |
T |
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| Q |
201 |
tggggaattctcaaaagggatgttgttgcctggtatcatagacat |
245 |
Q |
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| T |
35072218 |
tggggaattctcaaaagggctgttgttgcctggtatcatagacat |
35072262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 35072892 - 35073001
Alignment:
| Q |
35 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
134 |
Q |
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|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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| T |
35072892 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35072991 |
T |
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| Q |
135 |
ccaatcaatc |
144 |
Q |
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|||||||||| |
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| T |
35072992 |
ccaatcaatc |
35073001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 35106968 - 35106859
Alignment:
| Q |
35 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
134 |
Q |
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|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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| T |
35106968 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35106869 |
T |
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| Q |
135 |
ccaatcaatc |
144 |
Q |
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|||||||||| |
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| T |
35106868 |
ccaatcaatc |
35106859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 36296653 - 36296774
Alignment:
| Q |
23 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
122 |
Q |
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|||||||||| | |||||||| ||||| ||||||||| ||||| |||||||| || || ||||| || || | ||||||||| || || || ||||| |
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| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
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| Q |
123 |
tggagtttccttccaatcaatc |
144 |
Q |
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||| || ||||||||||||||| |
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| T |
36296753 |
tggggtctccttccaatcaatc |
36296774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 24014379 - 24014500
Alignment:
| Q |
23 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
122 |
Q |
| |
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|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
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| Q |
123 |
tggagtttccttccaatcaatc |
144 |
Q |
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||| || ||||||||||||||| |
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| T |
24014479 |
tggggtctccttccaatcaatc |
24014500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 24040948 - 24041053
Alignment:
| Q |
35 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
134 |
Q |
| |
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|||||||||| || || ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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| T |
24040948 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctcctt |
24041047 |
T |
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| Q |
135 |
ccaatc |
140 |
Q |
| |
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|||||| |
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| T |
24041048 |
ccaatc |
24041053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
53 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
134 |
Q |
| |
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||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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