View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_53 (Length: 256)
Name: NF21656_low_53
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38548950 - 38549168
Alignment:
| Q |
1 |
tatcatacaaacatgtttatagttttacttatggtagtttatccagtttcaacaaagaaacaggttgactcttccaccatggtccttaacaaagctcgac |
100 |
Q |
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| T |
38548950 |
tatcatacaaacatgtttatagttttacttatggtagtttatccagtttcaacaaagaaacaggttgactcttccaccatagtccttaacaaagctcgac |
38549049 |
T |
|
| Q |
101 |
gtccatcaattgcatcctctccaaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttcctttcaatcgtttcacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38549050 |
gtccatcaattgcatcctctccaaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttcctttcaatcgtttcacgt |
38549149 |
T |
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| Q |
201 |
tggtttgtcgatgcttttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
38549150 |
tggtttgtcgatgcttttg |
38549168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 7354137 - 7353975
Alignment:
| Q |
83 |
tccttaacaaagctcgacgtccatcaattgcatcctctccaaatgcttcccctgcaagccttgcttctttcattctttcacaccatttttctctcctttc |
182 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7354137 |
tccttaacaaagctcgacctccatcaattgcatcctctccaaatacttcccctgcaaaccctgcttctttcattctttcacaccatttttctctcctttc |
7354038 |
T |
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| Q |
183 |
ctttcaatcgtttcacgttggtttgtcgatgcttttgcagcctcacctttcatcattctcctttcatc |
250 |
Q |
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|| | ||||||| ||||||||| |||||||||||||||| |||| ||||||| |||||||||| |
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| T |
7354037 |
gtt-----catttcacgctggtttgtcaatgcttttgcagcctcgccttccatcattttcctttcatc |
7353975 |
T |
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