View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_low_57 (Length: 236)
Name: NF21656_low_57
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 38403845 - 38403665
Alignment:
| Q |
1 |
tttattctttattttctatgattttaatatannnnnnn-aataagaaaatgcttgttgtagcaaacaaactaatcccgaacaattcacgaccttgtattg |
99 |
Q |
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| T |
38403845 |
tttattctttattttctatgattttaatattttttttttaataagaaaatgcttgttgtagcaaacaaactaatcccgaacaattcacgaccttgtattg |
38403746 |
T |
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| Q |
100 |
ctaaatatccctctttaattacacatcatgatttccctgttttctgggcttggagcaatttaattggctataactgttatcg |
181 |
Q |
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| T |
38403745 |
ctaaatat-cctctttaattacacatcatgatttccctgttttccgggcttggagcaatttaattggctataactgttatcg |
38403665 |
T |
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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 30027978 - 30028057
Alignment:
| Q |
81 |
aattcacgaccttgtattgctaaatatccctctttaattacacatcatgatttccc-tgttttctgggcttggagcaatt |
159 |
Q |
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| T |
30027978 |
aattcacgaccttgtattgctaaatatccttctttgattacacctcatgttttcccttgttttctgggcttggagaaatt |
30028057 |
T |
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