View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_low_60 (Length: 228)

Name: NF21656_low_60
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_low_60
NF21656_low_60
[»] chr2 (13 HSPs)
chr2 (1-228)||(30870396-30870625)
chr2 (8-228)||(26353800-26354024)
chr2 (8-228)||(8910110-8910340)
chr2 (14-227)||(17353773-17353987)
chr2 (8-119)||(29454111-29454218)
chr2 (8-75)||(19033864-19033931)
chr2 (29-115)||(34214187-34214273)
chr2 (12-115)||(21430743-21430846)
chr2 (147-227)||(19033705-19033786)
chr2 (160-227)||(34213880-34213946)
chr2 (8-115)||(41341924-41342030)
chr2 (155-197)||(21430887-21430929)
chr2 (147-175)||(29454050-29454078)
[»] chr1 (11 HSPs)
chr1 (1-228)||(25878404-25878633)
chr1 (8-228)||(28007156-28007381)
chr1 (12-113)||(30936987-30937088)
chr1 (8-113)||(9343078-9343183)
chr1 (147-228)||(10918081-10918163)
chr1 (147-227)||(45438519-45438599)
chr1 (157-227)||(30937137-30937207)
chr1 (8-50)||(10917959-10918001)
chr1 (79-119)||(10918009-10918049)
chr1 (60-112)||(32991873-32991925)
chr1 (86-126)||(33372642-33372682)
[»] chr3 (10 HSPs)
chr3 (1-228)||(22604080-22604308)
chr3 (8-225)||(54377976-54378197)
chr3 (8-228)||(11559430-11559658)
chr3 (8-228)||(11568699-11568927)
chr3 (8-216)||(50093237-50093446)
chr3 (8-117)||(33757098-33757207)
chr3 (10-114)||(25746042-25746146)
chr3 (8-113)||(54783600-54783704)
chr3 (17-98)||(8414242-8414322)
chr3 (147-227)||(54783486-54783566)
[»] chr8 (13 HSPs)
chr8 (8-228)||(4975028-4975250)
chr8 (1-228)||(15075539-15075768)
chr8 (1-228)||(2751734-2751958)
chr8 (8-228)||(9293416-9293642)
chr8 (8-125)||(20990611-20990728)
chr8 (18-227)||(13322584-13322793)
chr8 (14-85)||(25380811-25380882)
chr8 (12-82)||(25689291-25689360)
chr8 (13-112)||(38758847-38758947)
chr8 (36-113)||(3687264-3687342)
chr8 (147-228)||(25690412-25690494)
chr8 (147-196)||(25380976-25381026)
chr8 (77-119)||(25690338-25690380)
[»] chr4 (5 HSPs)
chr4 (8-228)||(22433879-22434102)
chr4 (8-112)||(19898206-19898310)
chr4 (8-228)||(9591803-9592025)
chr4 (8-114)||(56490798-56490906)
chr4 (147-227)||(19898346-19898425)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-228)||(53684-53912)
[»] chr7 (4 HSPs)
chr7 (8-192)||(8543888-8544076)
chr7 (29-115)||(23428834-23428920)
chr7 (155-227)||(23428721-23428792)
chr7 (17-113)||(42594246-42594341)
[»] chr5 (10 HSPs)
chr5 (14-196)||(29069095-29069281)
chr5 (8-196)||(41249771-41249962)
chr5 (40-104)||(26708520-26708584)
chr5 (40-104)||(26978254-26978318)
chr5 (147-228)||(26708781-26708863)
chr5 (147-228)||(26978515-26978597)
chr5 (154-228)||(37192956-37193031)
chr5 (147-228)||(7031272-7031352)
chr5 (13-59)||(37193029-37193075)
chr5 (59-115)||(7031386-7031442)
[»] chr6 (4 HSPs)
chr6 (8-115)||(292171-292278)
chr6 (8-228)||(11082901-11083124)
chr6 (12-115)||(17371727-17371831)
chr6 (147-227)||(292063-292143)
[»] scaffold0070 (1 HSPs)
scaffold0070 (12-86)||(39895-39969)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30870396 - 30870625
Alignment:
Q  1 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870396 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcatatcgttggcaagaccataaaactagtattataatataaattattcttat 30870495  T
Q  101 atttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaa 198  Q
    |||||||||||||||||||||||||||  |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870496 atttgttgaaaaaggttgtaattgacctatgttggtggtgaaaaaattttaattatggttatattttttatactctattagaaatggacaaatattttaa 30870595  T
Q  199 acaaatcaacattttagggtaattataaat 228  Q
    ||||||||||||||||||||||||||||||    
T  30870596 acaaatcaacattttagggtaattataaat 30870625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 26353800 - 26354024
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  26353800 aaaatattcttttatgaaatctttaaccaattatcttagagcacatcgttggcaagaccaaaaaactactattataatataaactatttttatatttgtt 26353899  T
Q  108 gaaaaaggttgtaattga-cct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaa 203  Q
    ||||||| |||| | |||  ||  ||||||||||         ||| ||||||||||||| ||||||||||  ||||||| |||||||||||| || ||     
T  26353900 gaaaaagattgtgactgatgctacgttggtggtgaaaaaataattatttatggttatattgtttatactctgctagaaatagacaaatatttttaaaaat 26353999  T
Q  204 tcaacattttagggtaattataaat 228  Q
    ||||||||||||| |||||||||||    
T  26354000 tcaacattttaggataattataaat 26354024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 8910110 - 8910340
Alignment:
Q  8 aaaattttcttttatga--attctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttg 105  Q
    ||||| |||||||||||  | |||||||||||||||||||||||| |||||||||||||||| | ||||| || ||||||||||| ||||||||||||||    
T  8910110 aaaatattcttttatgatcaatctttaaccaattatcttagagcatatcgttggcaagaccacacaactactactataatataaactattcttatatttg 8910209  T
Q  106 ttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----ta 197  Q
    |||||||||||||| | |||| ||  ||||||||||         | ||||||||||||||||||||||| |   ||||||||||||||||||      |    
T  8910210 ttgaaaaaggttgtgaatgacgctacgttggtggtgaaaaaataattattatggttatattttttatactatgcgagaaatggacaaatatttaaaaaaa 8910309  T
Q  198 aacaaatcaacattttagggtaattataaat 228  Q
    || |||| |||||||||||| ||||||||||    
T  8910310 aaaaaattaacattttagggcaattataaat 8910340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 17353987 - 17353773
Alignment:
Q  14 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 113  Q
    |||||||||||| ||||||||||||| ||||||||||  ||||| |||||  |||||||||| ||||||| | |||||||||||||||||||||||||||    
T  17353987 ttcttttatgaaatctttaaccaattttcttagagcatgtcgttagcaaggtcataaaactactattatattctaaattattcttatatttgttgaaaaa 17353888  T
Q  114 gg--ttgtaattgacctgttggtgg-tgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacat 210  Q
     |   ||| ||||||  |||||||| ||        ||||||| ||||||||||||||||||||  ||||||| || |||||| ||| | ||||||||||    
T  17353887 tgctatgtgattgac--gttggtggttgaaaaaaaattaattaaggttatattttttatactctgctagaaatagaaaaatatcttacaaaaatcaacat 17353790  T
Q  211 tttagggtaattataaa 227  Q
    ||||| | |||||||||    
T  17353789 tttagagcaattataaa 17353773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 29454218 - 29454111
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||||||| ||  ||  |||||||||| |||||||||||| |||||||||||||| ||||||||| ||| ||    
T  29454218 aaaattttcttttatgaaatctttaaccaattatctcag--cat-tcgttggcaataccataaaactactattataatataaactattcttat-tttttt 29454123  T
Q  108 gaaaaaggttgt 119  Q
    ||||||||||||    
T  29454122 gaaaaaggttgt 29454111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 19033931 - 19033864
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaacta 75  Q
    |||||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||||||||||||    
T  19033931 aaaattttcttttatgaattctttaaccaattttctaagagtatatcgttagcaagaccataaaacta 19033864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 34214273 - 34214187
Alignment:
Q  29 tttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg 115  Q
    ||||||||||| ||||| | || |||||| |||||||| |||||||| ||||||  | |||| ||||||||||||||||||||||||    
T  34214273 tttaaccaattctcttaaaacatatcgttagcaagaccctaaaactactattatgttctaaactattcttatatttgttgaaaaagg 34214187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 21430743 - 21430846
Alignment:
Q  12 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 111  Q
    |||| ||||| ||| ||||||||||||| ||||||| || |||||| || | |||||||||||| ||||||  |  ||| |||||| |||||||||||||    
T  21430743 tttttttttaggaaatctttaaccaattctcttagaacatatcgttagccaaaccataaaactactattatgttcaaaactattctcatatttgttgaaa 21430842  T
Q  112 aagg 115  Q
    ||||    
T  21430843 aagg 21430846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 19033786 - 19033705
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatattttaaaca-aatcaacattttagggtaattataaa 227  Q
    |||||||||||| |||||||||||||||  | |||||||| |||||||| ||| | |||||||||||||| | |||||||||    
T  19033786 ttaattatggttctattttttatactcttctggaaatggagaaatatttaaaaaagaatcaacattttagagcaattataaa 19033705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 34213946 - 34213880
Alignment:
Q  160 tattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    |||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||  | |||||||||    
T  34213946 tattttttatactctactagaagtggaaaaatattttaaa-aaatcaacattttaaagcaattataaa 34213880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 41341924 - 41342030
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||| ||||| | || |||| |  ||| ||| |||||||  ||| ||| | |||| |||| ||||| |||||    
T  41341924 aaaattttcttttatgaaatctttaaccaattctcttacaacatatcgataacaa-accgtaaaactgctatgatattctaaactattattataattgtt 41342022  T
Q  108 gaaaaagg 115  Q
    ||||||||    
T  41342023 gaaaaagg 41342030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 21430887 - 21430929
Alignment:
Q  155 ggttatattttttatactctattagaaatggacaaatatttta 197  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||    
T  21430887 ggttatattttttatactctactagaaatggaaaaacatttta 21430929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 29454078 - 29454050
Alignment:
Q  147 ttaattatggttatattttttatactcta 175  Q
    |||||||||||||||||||||||||||||    
T  29454078 ttaattatggttatattttttatactcta 29454050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25878633 - 25878404
Alignment:
Q  1 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25878633 tttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttat 25878534  T
Q  101 atttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaa 198  Q
    |||||||||||||||||||||||||||  |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25878533 atttgttgaaaaaggttgtaattgacctatgttggtggtgaaaaaaaattaattatggttatattttttatactctattagaaatggacaaatattttaa 25878434  T
Q  199 acaaatcaacattttagggtaattataaat 228  Q
    ||||||||||||||||||||||||||||||    
T  25878433 acaaatcaacattttagggtaattataaat 25878404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 28007381 - 28007156
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||| ||||||||||||| ||||||||||||||||| | |||| |||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||    
T  28007381 aaaaatttcttttatgaaatctttaaccaattatctcaaagcatatcgttggcaagattataaaactactattataatataaactattcttatatttgtt 28007282  T
Q  108 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaaca-a 202  Q
    ||||||| |||||| |||| ||  ||||||| ||         ||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |    
T  28007281 gaaaaagattgtaactgacactacgttggtgatgaaaaaataattaattatggttatattttttatactctgctagaaatggacaaatattttaaaaaga 28007182  T
Q  203 atcaacattttagggtaattataaat 228  Q
    ||||||||||||| | ||||||||||    
T  28007181 atcaacattttagagcaattataaat 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 30936987 - 30937088
Alignment:
Q  12 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 111  Q
    ||||||||||||||  |||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  30936987 ttttcttttatgaaacctttaaccaattctcttagagcatatcgttagcaagaccataaaactactattatattttaaattattcttatatttgttgaaa 30937086  T
Q  112 aa 113  Q
    ||    
T  30937087 aa 30937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 9343078 - 9343183
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||| |||||||| | |||||| ||||||| ||||||||| | | ||| | ||||||||| |||||||||||    
T  9343078 aaaattttcttttatgaaatctttaaccaattctcttagagtatatcgttagcaagactataaaactactctcatattctaaattatttttatatttgtt 9343177  T
Q  108 gaaaaa 113  Q
    ||||||    
T  9343178 gaaaaa 9343183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 10918081 - 10918163
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaata-ttttaaacaaatcaacattttagggtaattataaat 228  Q
    ||||||| |||||||||||||||||||   ||||||| |||||||| ||||||| ||||||||||||||| | ||||||||||    
T  10918081 ttaattaaggttatattttttatactccgctagaaattgacaaatatttttaaaaaaatcaacattttagagcaattataaat 10918163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 45438519 - 45438599
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    ||||||||| |||||||||||||||| |  |||||||| | ||||||||| || ||||||| ||||| | |||||||||||    
T  45438519 ttaattatgtttatattttttatactatgctagaaatgaaaaaatatttttaaaaaatcaatatttttgagtaattataaa 45438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 30937137 - 30937207
Alignment:
Q  157 ttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    |||||||||||||||||   |||||||||| |||||| ||||  ||||||||||||||| | |||||||||    
T  30937137 ttatattttttatactccgctagaaatggaaaaatatcttaagaaaatcaacattttagagcaattataaa 30937207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 10917959 - 10918001
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagca 50  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||    
T  10917959 aaaaatttcttttatgaaatctttaaccaattatctcagagca 10918001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 10918009 - 10918049
Alignment:
Q  79 ttataatataaattattcttatatttgttgaaaaaggttgt 119  Q
    ||||||||| || ||||||||||||||||||||||| ||||    
T  10918009 ttataatattaactattcttatatttgttgaaaaagcttgt 10918049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 32991873 - 32991925
Alignment:
Q  60 caagaccataaaactagtattataatataaattattcttatatttgttgaaaa 112  Q
    ||||| ||||||| || ||||||| | |||| |||||||||||||||||||||    
T  32991873 caagatcataaaattactattatattctaaactattcttatatttgttgaaaa 32991925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 33372642 - 33372682
Alignment:
Q  86 ataaattattcttatatttgttgaaaaaggttgtaattgac 126  Q
    ||||| |||||||||||||||||||||| ||||| ||||||    
T  33372642 ataaactattcttatatttgttgaaaaaagttgtgattgac 33372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 22604308 - 22604080
Alignment:
Q  1 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22604308 tttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttat 22604209  T
Q  101 atttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaa 198  Q
    |||||||||||||||||||||||||||  |||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22604208 atttgttgaaaaaggttgtaattgacctatgttgggggtg-aaaaaaattaattatggttatattttttatactctattagaaatggacaaatattttaa 22604110  T
Q  199 acaaatcaacattttagggtaattataaat 228  Q
    ||||||||||||||||||||||||||||||    
T  22604109 acaaatcaacattttagggtaattataaat 22604080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 54378197 - 54377976
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||| ||| ||||||||||||||||| | |||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  54378197 aaaattttcttttacgaaatctttaaccaattatctcaaagcatatcgttggcaagaccatacaactactattataatataaactattcttatatttgtt 54378098  T
Q  108 -gaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaa 203  Q
      ||||| ||||| |||||| ||  |||||||||         |||||||||||||||||||||||||||   ||||| | |||||||||||| || |||    
T  54378097 aaaaaaatgttgtgattgacgctacgttggtggtcaaaaataattaattatggttatattttttatactccgctagaacttgacaaatatttttaaaaaa 54377998  T
Q  204 tcaacattttagggtaattata 225  Q
    |||||||||||||| |||||||    
T  54377997 tcaacattttagggcaattata 54377976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 11559658 - 11559430
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11559658 aaaattttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactactattatggtataaattattcttatatttgtt 11559559  T
Q  108 gaaaaaggttgtaattga-cct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----taaa 199  Q
    |||||||||||| | |||  ||  ||||||||||         | | ||||||| ||||||||||| |||| |||||||||||||||||||      |||    
T  11559558 gaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaatatggttgtattttttatagtctactagaaatggacaaatatttaaaaaaaaa 11559459  T
Q  200 caaatcaacattttagggtaattataaat 228  Q
     ||||||||||||||||  ||||||||||    
T  11559458 aaaatcaacattttaggacaattataaat 11559430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 11568927 - 11568699
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11568927 aaaattttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactactattatggtataaattattcttatatttgtt 11568828  T
Q  108 gaaaaaggttgtaattga-cct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----taaa 199  Q
    |||||||||||| | |||  ||  ||||||||||         | | ||||||| ||||||||||| |||| |||||||||||||||||||      |||    
T  11568827 gaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaatatggttgtattttttatagtctactagaaatggacaaatatttaaaaaaaaa 11568728  T
Q  200 caaatcaacattttagggtaattataaat 228  Q
     ||||||||||||||||  ||||||||||    
T  11568727 aaaatcaacattttaggacaattataaat 11568699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 50093446 - 50093237
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaac---tagtattataatataaattattcttatattt 104  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||   || |||||| ||||||| |||||||||||||    
T  50093446 aaaaatttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactattactattattatataaactattcttatattt 50093347  T
Q  105 gttgaaaaaggttgtaattgacctgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaata-ttttaaacaaa 203  Q
    ||||||||||||||| | | ||  ||||||||||        |||||||| ||||||||||| ||||| | ||||||||||||||||| |||| || |||    
T  50093346 gttgaaaaaggttgtgact-ac--gttggtggtgaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaa 50093250  T
Q  204 tcaacattttagg 216  Q
    |||||||||||||    
T  50093249 tcaacattttagg 50093237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 33757207 - 33757098
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    ||||||||||||||||||||| |||||||||| |||||||| | || ||| |||||| |||||||||| ||||||| | |||| |||| |||||||||||    
T  33757207 aaaattttcttttatgaattcattaaccaattctcttagagtatattgttagcaagatcataaaactactattatattctaaactatttttatatttgtt 33757108  T
Q  108 gaaaaaggtt 117  Q
     |||||||||    
T  33757107 aaaaaaggtt 33757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 25746042 - 25746146
Alignment:
Q  10 aattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttga 109  Q
    ||||| |||||||||| ||||||| ||||| ||||||||   || ||| ||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  25746042 aatttccttttatgaaatctttaatcaattctcttagagattattgttagcaagaccataaaactactattatattttaaactattcttatatttgttga 25746141  T
Q  110 aaaag 114  Q
    |||||    
T  25746142 aaaag 25746146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 54783704 - 54783600
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| | ||||||||||| ||||||| ||  ||||| ||||||||||||||||| |||||| || | || |||| |||||||||||    
T  54783704 aaaattttcttttatgaaatatttaaccaattctcttagaacatgtcgttagcaagaccataaaactactattat-attttaactatttttatatttgtt 54783606  T
Q  108 gaaaaa 113  Q
    ||||||    
T  54783605 gaaaaa 54783600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8414322 - 8414242
Alignment:
Q  17 ttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattctt 98  Q
    ||||||||| | ||||||||||| |||||||||| |||||| |||| ||||| |||||| ||||||| | |||| |||||||    
T  8414322 ttttatgaaatatttaaccaattctcttagagcatatcgttagcaataccat-aaactattattatattctaaactattctt 8414242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 54783566 - 54783486
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    |||||||||||| ||| ||||||||||    ||||||||| ||||||||  || ||||||||||||||| | |||||||||    
T  54783566 ttaattatggttgtatgttttatactcggcaagaaatggaaaaatatttataaaaaatcaacattttagagcaattataaa 54783486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 4975250 - 4975028
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4975250 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttatatttgtt 4975151  T
Q  108 gaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatc 205  Q
    |||||| |||||||||||||  |||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4975150 gaaaaaagttgtaattgacctatgttggtggtgaaaaaaaattaattatggttatattttttataccctattagaaatggacaaatattttaaacaaatc 4975051  T
Q  206 aacattttagggtaattataaat 228  Q
    ||||||||||| |||||||||||    
T  4975050 aacattttaggataattataaat 4975028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15075539 - 15075768
Alignment:
Q  1 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15075539 tttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttat 15075638  T
Q  101 atttgttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttta 197  Q
    |||||||||||||||||||||||||| ||  ||||||||||        |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15075639 atttgttgaaaaaggttgtaattgacactacgttggtggtg-aaaaaaattaattatggttatattttttatactctgttagaaatggacaaatatttta 15075737  T
Q  198 aacaaatcaacattttagggtaattataaat 228  Q
    |||||||||||||||||||||||||||||||    
T  15075738 aacaaatcaacattttagggtaattataaat 15075768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2751734 - 2751958
Alignment:
Q  1 tttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttat 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2751734 tttagataaaattttcttttatgaattctttaaccaattatcttagagcatatcgttggcaagaccataaaactattattataatataaattattcttat 2751833  T
Q  101 atttgttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttta 197  Q
    ||||||||||||||||||| | |||| ||  ||||||||||          |||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  2751834 atttgttgaaaaaggttgtgactgacgctacgttggtggtgaaaa------aattatggttatattttttatactatgttaaaaatggacaaatatttta 2751927  T
Q  198 aacaaatcaacattttagggtaattataaat 228  Q
    |||| |||||||||||||||||| |||||||    
T  2751928 aacatatcaacattttagggtaaatataaat 2751958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 9293642 - 9293416
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||| ||||||||||||||||  || |||||||||||||||||||||||| ||||||||||||||  |||||||| ||| ||    
T  9293642 aaaattttcttttatgaaatctgtaaccaattatcttag--catatcgttggcaagaccataaaactactattataatataaaccattcttat-tttttt 9293546  T
Q  108 gaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt------taa 198  Q
    |||||||||||| | | || ||  ||||||||||        ||||||||||||||||||||||||||||  |||||| ||| ||||||||       ||    
T  9293545 gaaaaaggttgtgactaacgctacgttggtggtgaaaaataattaattatggttatattttttatactctgctagaaacggataaatatttaaaaaaaaa 9293446  T
Q  199 acaaatcaacattttagggtaattataaat 228  Q
    | ||||||||||||||||| ||||||||||    
T  9293445 aaaaatcaacattttagggcaattataaat 9293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 20990728 - 20990611
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||| ||||| | |||| || ||||||||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  20990728 aaaattttcttttatgaaatctttaaccaactatctcatagcatattgttggcaagaccatacaactactattataatataaaatattattatatttgtt 20990629  T
Q  108 gaaaaaggttgtaattga 125  Q
    |||||||||||| |||||    
T  20990628 gaaaaaggttgtgattga 20990611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 13322584 - 13322793
Alignment:
Q  18 tttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg-- 115  Q
    ||||| || ||||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||      
T  13322584 tttataaaatctttaaccaattctcttagagcatatcgttagcaagactataaaactattattat-ttctaaattattcttatatttgttgaaaaaggct 13322682  T
Q  116 ttgtaattgacctgttggtggt--gnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacatttt 213  Q
    |||| ||||||  |||||||||           ||||||||||||||||||||||||||||  ||||||| || |||||| || || |||||||||||||    
T  13322683 ttgtcattgac--gttggtggttgaaaaaataattaattatggttatattttttatactctgctagaaat-gaaaaatatctttaaaaaatcaacatttt 13322779  T
Q  214 agggtaattataaa 227  Q
    || | |||||||||    
T  13322780 agagcaattataaa 13322793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 25380811 - 25380882
Alignment:
Q  14 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataat 85  Q
    |||||||||||| |||||||||||||||||||||| | |||||| |||||||||| |||||| |||||||||    
T  25380811 ttcttttatgaaatctttaaccaattatcttagagtatatcgttagcaagaccatcaaactactattataat 25380882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 25689291 - 25689360
Alignment:
Q  12 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattat 82  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  25689291 ttttcttttatgaaatctttaaccaattatcttagagcatatcgttagcaaga-cataaaactactattat 25689360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 38758847 - 38758947
Alignment:
Q  13 tttcttttatgaattcttt-aaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 111  Q
    ||||||||| ||| ||||| |||||| | ||||||| || |||||| | ||||||||||||||| ||||||| | || ||||||||||||||||||||||    
T  38758847 tttcttttaggaaatcttttaaccaaatctcttagatcatatcgttagtaagaccataaaactactattatattctagattattcttatatttgttgaaa 38758946  T
Q  112 a 112  Q
    |    
T  38758947 a 38758947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 3687342 - 3687264
Alignment:
Q  36 aattatcttagagcacatcgttggcaa-gaccataaaactagtattataatataaattattcttatatttgttgaaaaa 113  Q
    ||||||||||||||| || ||| |||| ||  ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  3687342 aattatcttagagcatatagttagcaaagattataaaactactattatattctaaattattcttatatttgttgaaaaa 3687264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 25690412 - 25690494
Alignment:
Q  147 ttaattatggttatatttt-ttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaat 228  Q
    ||||||||||||||||||| ||||||||   |||||||| |||||||||| ||| | |||||||||||| || ||||||||||    
T  25690412 ttaattatggttatatttttttatactcggctagaaatgcacaaatatttaaaaaatatcaacattttatggcaattataaat 25690494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 25380976 - 25381026
Alignment:
Q  147 ttaattatggttatattt-tttatactctattagaaatggacaaatatttt 196  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  25380976 ttaattatggttatatttctttatactctgctagaaatggacaaatatttt 25381026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 25690338 - 25690380
Alignment:
Q  77 tattataatataaattattcttatatttgttgaaaaaggttgt 119  Q
    ||||||||| |||| |||| |||||||||||||||||||||||    
T  25690338 tattataatctaaactattattatatttgttgaaaaaggttgt 25690380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 22433879 - 22434102
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  22433879 aaaattttcttttatgaaatctttaaccaattatcttcgagcatatcgttggcaagaccataaaactaccattataatataaattattgttatatttgtt 22433978  T
Q  108 gaaaaaggttgtaattgacct--gttggtggt-gnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaat 204  Q
    |||||||||||| | |   ||  |||||||||          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22433979 gaaaaaggttgtgactacgctacgttggtggtaaaaaaataattaattatggttacattttttatactctattagaaatggacaaatattttaaacaaat 22434078  T
Q  205 caacattttagggtaattataaat 228  Q
    ||||||||||||||||||||||||    
T  22434079 caacattttagggtaattataaat 22434102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 19898206 - 19898310
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||||||| ||||||  | |||| ||||| ||||||||||    
T  19898206 aaaattttcttttatgaaatctttaaccaattttattagagcatatcgttagcaagaccataaaactactattatgctctaaactattcctatatttgtt 19898305  T
Q  108 gaaaa 112  Q
    |||||    
T  19898306 gaaaa 19898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 9591803 - 9592025
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaatta-ttcttatatttgt 106  Q
    |||||||||||||||||  ||||||||||||| |||||||| | || ||| |||||| |||||||||| ||||||| | |||| || || |||||||| |    
T  9591803 aaaattttcttttatgatatctttaaccaattctcttagagaatattgttagcaagatcataaaactactattatattctaaactattttttatatttat 9591902  T
Q  107 tgaaaaaggt--tgtaattgacctgttggtggt--gnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaa 202  Q
    ||||||| ||  ||| |||||  ||||||||||           ||||||||||||||||||||| ||||||  |||||||||| |||||||||||| ||    
T  9591903 tgaaaaatgttatgtgattga--tgttggtggttgaaaaaataattaattatggttatatttttt-tactctgctagaaatggaaaaatattttaaaaaa 9591999  T
Q  203 atcaacattttagggtaattataaat 228  Q
     |||||||||||  | ||||||||||    
T  9592000 ctcaacattttatagcaattataaat 9592025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 56490906 - 56490798
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatc--gttggcaagaccataaaactagtattataatataaattattcttatatttg 105  Q
    |||||||||||||||||| ||||||| ||||| ||||| ||||  ||  ||| | |||| ||||| | |  ||||||| |||| ||||||||||||||||    
T  56490906 aaaattttcttttatgaaatctttaatcaattctcttatagcatctctagttaggaagatcataacatttctattatattatatattattcttatatttg 56490807  T
Q  106 ttgaaaaag 114  Q
    |||||||||    
T  56490806 ttgaaaaag 56490798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 19898346 - 19898425
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    ||||||| |||||||||||| | ||||||||| ||||||| ||||||||| || ||||||||||||||  | |||||||||    
T  19898346 ttaattaaggttatattttt-acactctattaaaaatggaaaaatatttttaaaaaatcaacattttaaagcaattataaa 19898425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 53912 - 53684
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||| ||||  |||||||| |||||||||||| |||||||||    
T  53912 aaaattttcttttatgaaatctttaaccaattatctcagagcatattgttggcaagaccatacaacttctattataacataaattattctaatatttgtt 53813  T
Q  108 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttt----aaa 199  Q
    |||||||||||| | |||| ||  ||||||||||         ||||||||| |||||||||||||||| |  ||||||||||||||||||||    |||    
T  53812 gaaaaaggttgtgactgacgctacgttggtggtgaaaaaataattaattatgattatattttttatactttgctagaaatggacaaatattttttaaaaa 53713  T
Q  200 caaatcaacattttagggtaattataaat 228  Q
     ||||||||||| ||||| ||||||||||    
T  53712 aaaatcaacattgtagggcaattataaat 53684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 8543888 - 8544076
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  8543888 aaaattttcttttatgaaatctttaatcaattatctcagagcatatcgttggcaagaccatacaactactattataatataaactattcttatatttgtt 8543987  T
Q  108 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaata 192  Q
    |||||||||||| | |||| ||  |||| |||||         || |||||||||||||||||||||||||  ||||||||||||||||    
T  8543988 gaaaaaggttgtgactgacgctacgttgatggtgaaaaaataattgattatggttatattttttatactctgctagaaatggacaaata 8544076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 23428920 - 23428834
Alignment:
Q  29 tttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg 115  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||| |||| |  | |||| |||||| |||||||||||||||||    
T  23428920 tttaaccaattatcttagaacatatcgttagcaagaccataaaactactattttgttctaaactattctaatatttgttgaaaaagg 23428834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 23428792 - 23428721
Alignment:
Q  155 ggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 227  Q
    ||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||  | |||||||||    
T  23428792 ggttatattttttatactctactagaaatggaaaaatatttt-aagaaatcaacattttaaagcaattataaa 23428721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 42594341 - 42594246
Alignment:
Q  17 ttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 113  Q
    |||||||||| || ||||||||| |||||||||| ||| || | ||| ||||||||||| ||||||| | ||||||||||| ||||||||| |||||    
T  42594341 ttttatgaat-ctataaccaattctcttagagcatatcattagtaaggccataaaactactattatattttaaattattctcatatttgttaaaaaa 42594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 29069281 - 29069095
Alignment:
Q  14 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 113  Q
    |||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  29069281 ttcttttatgaaatctttaaccaattatctcatagcatatcgttggcaagaccataaaactactattattatataaactattcttatatttgttgaaaaa 29069182  T
Q  114 ggttgtaattgacct---gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttt 196  Q
    |||||| | |||| |   ||||||||||         |||||||| ||||||||||||||||  |  ||||||||||||||||||||    
T  29069181 ggttgtgactgacgttacgttggtggtgaaaaaataattaattatagttatattttttataccatgctagaaatggacaaatatttt 29069095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 41249771 - 41249962
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||||||||||||| ||| ||||||||||||||| | |||||| || ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  41249771 aaaattttcttttaagaaatctttaaccaattatatcagagcatattgttggcaagaccatacaactactattataatataaactattcttatatttgtt 41249870  T
Q  108 gaaaaaggttgtaattgac---ctgttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttt 196  Q
    |||||| ||||| | ||||    |||| ||||||         ||||||||||||||||||||||||||||  |||||||||| |||||||||    
T  41249871 gaaaaa-gttgtgactgacgctatgttagtggtgaaaaaataattaattatggttatattttttatactctgctagaaatggataaatatttt 41249962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 26708520 - 26708584
Alignment:
Q  40 atcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatattt 104  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  26708520 atcttagagcatatcgttggcaagaccataaaactactattataatataaactatttttatattt 26708584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 26978254 - 26978318
Alignment:
Q  40 atcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatattt 104  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  26978254 atcttagagcatatcgttggcaagaccataaaactactattataatataaactatttttatattt 26978318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 26708781 - 26708863
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaata-ttttaaacaaatcaacattttagggtaattataaat 228  Q
    ||||||||| ||||||||||||| ||||  |||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||    
T  26708781 ttaattatgattatattttttattctctgctagaaatggataaatatttttaaaaaaatcaacattttagggcaattataaat 26708863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 26978515 - 26978597
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaata-ttttaaacaaatcaacattttagggtaattataaat 228  Q
    ||||||||| ||||||||||||| ||||  |||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||    
T  26978515 ttaattatgattatattttttattctctgctagaaatggataaatatttttaaaaaaatcaacattttagggcaattataaat 26978597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 37193031 - 37192956
Alignment:
Q  154 tggttatattttttatactctattagaaatggacaaata-ttttaaacaaatcaacattttagggtaattataaat 228  Q
    |||||||||||||||||||||  |||||||||||||||| ||||  | ||||||||||||||||  ||||||||||    
T  37193031 tggttatattttttatactctgctagaaatggacaaatatttttttaaaaatcaacattttaggacaattataaat 37192956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 7031352 - 7031272
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaat 228  Q
    ||||||| ||||||||||||||||||||| |||||||| | |||| |||| || ||||||||| ||||| | ||||| ||||    
T  7031352 ttaattaaggttatattttttatactctactagaaatgaaaaaatgtttt-aagaaatcaacagtttagagcaattacaaat 7031272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 37193075 - 37193029
Alignment:
Q  13 tttcttttatgaattctttaaccaattatcttagagcacatcgttgg 59  Q
    ||||||||||||| ||||||||||||||||| | |||| ||||||||    
T  37193075 tttcttttatgaaatctttaaccaattatctcatagcatatcgttgg 37193029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 7031442 - 7031386
Alignment:
Q  59 gcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg 115  Q
    ||||||||||||||||| |||| |  | |||| |||||| |||||||||||||||||    
T  7031442 gcaagaccataaaactactattttgttctaaactattctaatatttgttgaaaaagg 7031386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 292278 - 292171
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||| ||| ||||||||| ||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  292278 aaaagtttattttatgaaatctttaaacaattctcttagagcatatcgttagcaagaccataaaactactattatattataaattattcttatatttgtt 292179  T
Q  108 gaaaaagg 115  Q
    ||||||||    
T  292178 gaaaaagg 292171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 11083124 - 11082901
Alignment:
Q  8 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 107  Q
    |||| ||||||||||||| |||||||||| || |||||||||   |||||   ||||||||||||||| ||||||| | |||||||||||||||||||||    
T  11083124 aaaaatttcttttatgaaatctttaaccagttttcttagagcgtgtcgttaataagaccataaaactactattatattctaaattattcttatatttgtt 11083025  T
Q  108 gaaaaagg--ttgtaattgacctgttggtggt--gnnnnnnnnttaattatggttata-ttttttatactctattagaaatggacaaatattttaaacaa 202  Q
    ||||||||   ||| ||||||  |||| ||||           ||||||| ||||||| ||||||||||||| |||||||| || |||||| ||||| ||    
T  11083024 gaaaaaggctatgtgattgac--gttgatggttgaaaaattaattaattagggttatatttttttatactctgttagaaatagaaaaatatcttaaaaaa 11082927  T
Q  203 atcaacattttagggtaattataaat 228  Q
    ||||| ||||||| | ||||||||||    
T  11082926 atcaagattttagagcaattataaat 11082901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 17371727 - 17371831
Alignment:
Q  12 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatat-aaattattcttatatttgttgaa 110  Q
    |||||||||||| | ||||||||||||| |||||||||| |||||| ||||||||||||||| | ||||||| | | ||||| |||||||||||||| ||    
T  17371727 ttttcttttatgcaatctttaaccaattctcttagagcatatcgttagcaagaccataaaacaactattatattctaaaattgttcttatatttgttaaa 17371826  T
Q  111 aaagg 115  Q
    |||||    
T  17371827 aaagg 17371831  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 292143 - 292063
Alignment:
Q  147 ttaattatggttatattttttatactctattagaaatggacaaatat-tttaaacaaatcaacattttagggtaattataaa 227  Q
    ||||||||||||||||||||||||||||  ||||||  || |||||| ||| || |||| |||||||||| | |||||||||    
T  292143 ttaattatggttatattttttatactctgctagaaacagaaaaatatcttttaaaaaat-aacattttagagcaattataaa 292063  T

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Target: scaffold0070 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 39969 - 39895
Alignment:
Q  12 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataata 86  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  39969 ttttcttatatgaaatctttaaccaattatcttagagcatatcgttagcaagaccataaaactactattataata 39895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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