View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_low_63 (Length: 225)
Name: NF21656_low_63
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_low_63 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11817493 - 11817701
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
11817493 |
agggacaatattaaaagaattattgaaaagacggttgttacgctcactccacaaaacccaagcacacaacagccaaataagctgcaagaatgatcttttt |
11817592 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11817593 |
gctttaccaacacctgccaaatgagtaaactgcaccagatggtctgtaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
11817692 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
11817693 |
acaaagatg |
11817701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3168962 - 3168754
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3168962 |
agggacaatattaatagaattattgaaaagacggttgttacgttcactccacaaaacccaagcacacaacagccaaataagctgcaagaatgatcttttt |
3168863 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3168862 |
gctttaccaacacctgtcaaatgagtaaactgcatcagatgatctgtaatgatgttagggtccactcctgaaaaaccaatccaatcatgcacctgctgcc |
3168763 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
3168762 |
acaaagatg |
3168754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 19182270 - 19182062
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||| || |||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
19182270 |
agggacaatattaatagaattattgaaaagacggttgttacgttcactccacaaaacccaagcacacaacagccaaataaattgcaagaatgatcttttt |
19182171 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19182170 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
19182071 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
19182070 |
acaaagatg |
19182062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38357170 - 38357378
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38357170 |
agggacagtattaaaagaattattgaaaagacggttgttacgctcactccacaaaacccaagcacacaaaagccaaataagctccaagaatgatcttttt |
38357269 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38357270 |
gctttagcaaaccctgccaaatgagtaaactgcacaagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacatgctgcc |
38357369 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
38357370 |
acaaagatg |
38357378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 13836702 - 13836528
Alignment:
| Q |
31 |
acggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaac |
130 |
Q |
| |
|
|||||||||| | ||| |||| | || ||||| |||||||||| |||||||| ||| |||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
13836702 |
acggttgttaggttcattccatataacccaagaacacaaaagccaaataagccgcatgaatgaacttttagctttaccaacacctg----gtgagtaaac |
13836607 |
T |
|
| Q |
131 |
tgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
|||| || ||| |||| ||| || |||| |||||| || ||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
13836606 |
tgcaccaaatgatctgcaataatattagagtccaccccaagaaaaccaatccaactgcgcacctgttgccacaaagatg |
13836528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 6866233 - 6866355
Alignment:
| Q |
79 |
aagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaacca |
178 |
Q |
| |
|
|||||||| ||| || ||||| ||||| |||||||||| || |||||||||||||| || ||| | || ||| || |||| ||||||||| ||||||| |
|
|
| T |
6866233 |
aagctgcatgaacgaacttttagctttgccaacacctgtcatatgagtaaactgcaccaaatgatatgcaataatattagagtccactccaagaaaacca |
6866332 |
T |
|
| Q |
179 |
atccaatcacgcacctgctgcca |
201 |
Q |
| |
|
||||| || |||||||||||||| |
|
|
| T |
6866333 |
atccattcgcgcacctgctgcca |
6866355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 29094912 - 29094811
Alignment:
| Q |
32 |
cggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaact |
131 |
Q |
| |
|
||||| ||||| ||| |||| | || ||||| |||||||||| ||||||| ||| ||| || ||||| ||||| |||||||||| |||| ||||||||| |
|
|
| T |
29094912 |
cggttattacgttcattccatataacccaagaacacaaaagccaaataagtcgcatgaa-gaacttttagcttttccaacacctgtcaaaagagtaaact |
29094814 |
T |
|
| Q |
132 |
gca |
134 |
Q |
| |
|
||| |
|
|
| T |
29094813 |
gca |
29094811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 35123043 - 35123010
Alignment:
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgca |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
35123043 |
gctttaccaacacctgccaaataagtaaactgca |
35123010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 34311918 - 34311986
Alignment:
| Q |
18 |
aattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgca |
86 |
Q |
| |
|
||||||| || || ||||||||||| ||| |||||| | ||||| |||||||||| |||||||||||| |
|
|
| T |
34311918 |
aattattgaatagtcggttgttacgttcattccacactacccaagaacacaaaagccaaataagctgca |
34311986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 44083449 - 44083241
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
44083449 |
agggacactattaaaagaattattgaaaagacggttgttacgctcactccacaaaacccaagcacacaacagccaaataagctgcaagaatgatcttttt |
44083350 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44083349 |
gctttaccaacacctgtcaaatgagtaaactgcaccagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcatctgctgcc |
44083250 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
44083249 |
acaaagatg |
44083241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 40467534 - 40467737
Alignment:
| Q |
6 |
caatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgcttt |
105 |
Q |
| |
|
||||| ||| || |||||| || | |||||||||||| ||| |||| | || ||||| |||||||||| |||||||| ||| |||||| ||||| ||||| |
|
|
| T |
40467534 |
caatagtaacagtattattgaacaaacggttgttacgttcattccatataacccaagaacacaaaagccaaataagccgcatgaatgaacttttagcttt |
40467633 |
T |
|
| Q |
106 |
accaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaa |
205 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||| |||| ||| || |||| |||||| || ||||||||||||||| |||||||| |||||| || |
|
|
| T |
40467634 |
accaacacctatcatatgagtaaactgcaccaaatgatctgcaataatattagagtccaccccaagaaaaccaatccaatcgcgcacctgttgccacaaa |
40467733 |
T |
|
| Q |
206 |
gatg |
209 |
Q |
| |
|
|||| |
|
|
| T |
40467734 |
gatg |
40467737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 23942050 - 23942228
Alignment:
| Q |
31 |
acggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaac |
130 |
Q |
| |
|
|||||||||||| ||| |||| | || ||||| ||| |||||| |||||||| || |||||| ||||| |||||||||||||||| || |||||||||| |
|
|
| T |
23942050 |
acggttgttacgttcattccatataacccaagaacataaaagccaaataagccacatgaatgaacttttagctttaccaacacctgtcatatgagtaaac |
23942149 |
T |
|
| Q |
131 |
tgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
|||| || ||| |||| ||| || |||| |||||| || ||| ||||||||||| ||||||| |||||| |||||| |
|
|
| T |
23942150 |
tgcaccaaatgatctgcaataatattagagtccaccccaagaaacccaatccaatcgcgcacctattgccacaaagatg |
23942228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 27083336 - 27083451
Alignment:
| Q |
19 |
attattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgcc |
118 |
Q |
| |
|
|||||| |||| |||||||||||| ||| |||||| || ||||| ||||| || |||| ||||||| ||| || | ||| |||||||||||||||| | |
|
|
| T |
27083336 |
attattgaaaatacggttgttacgttcattccacacaacccaagtacacagtagtcaaattagctgcaggaacgaacgtttagctttaccaacacctgtc |
27083435 |
T |
|
| Q |
119 |
aaatgagtaaactgca |
134 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
27083436 |
atataagtaaactgca |
27083451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 18767111 - 18767319
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
18767111 |
agggacaatattaacaaaattattgaaaagacggttgttacgctcactccacaaaacccaagcacacaacagccaaataagctgcaagaatgatcttttt |
18767210 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18767211 |
gctttaccaacacctgccaaatgagtaaactgcaccagatggtctgtaatgatgttagggtccactcctgaaaaaccaattcaatcacgcacctgctgcc |
18767310 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
18767311 |
acaaagatg |
18767319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8771137 - 8771345
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||| |||||| || |||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
8771137 |
agggacaatattaatagaattattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatcttttt |
8771236 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
8771237 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgatgttagagtccactcctaaaaaaccaatccaatcgcgcacctgctgcg |
8771336 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
8771337 |
acaaagatg |
8771345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 41801157 - 41801358
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||||| |||||||||| || ||||| |||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
41801157 |
agggacaagattaacagacttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagctgtaagaacgatctttta |
41801256 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
41801257 |
gttttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgataatagggtccactcctaaaatacaaatccaatcacgcacctgctgcc |
41801356 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
41801357 |
ac |
41801358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 34458595 - 34458387
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||| || ||||| |||||||||| ||||||| || ||||| |||||||| |
|
|
| T |
34458595 |
agggacaagattaacggaattattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagttgtaagaacgatctttta |
34458496 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| | || |||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
34458495 |
gttttaccaacacctgccaaatgagtaaactgcaccagatgatttgtaatgataatagggtccactcctaaaataccaatccaatcacgcacctgctgcc |
34458396 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
34458395 |
acaaagatg |
34458387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 18670888 - 18671073
Alignment:
| Q |
16 |
agaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacct |
115 |
Q |
| |
|
||||||||| || | |||||| ||||| ||| ||||| | ||||| |||||| ||| |||||||||||| ||| | ||||| ||||||||||||| | |
|
|
| T |
18670888 |
agaattattgaacaaacggttattacgttcattccaccctacccaagaacacaagagccaaataagctgcacgaacaaacttttagctttaccaacacat |
18670987 |
T |
|
| Q |
116 |
gccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
| |||||||||||||| || |||||| |||| ||| || ||| ||| ||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
18670988 |
gtcaaatgagtaaactccaccagatgatctgcaataatattatagtcgactccaacaaaaccaatacaatcgcgcacctgctgcca |
18671073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 34344536 - 34344713
Alignment:
| Q |
32 |
cggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaact |
131 |
Q |
| |
|
||||| ||||| ||| |||| | || ||||| |||||||||| |||||||| ||| ||| || ||||| ||||| ||||||||| |||| ||||||||| |
|
|
| T |
34344536 |
cggttattacgttcattccatataacccaagaacacaaaagcgaaataagccgcatgaaagaacttttagcttttccaacacctatcaaaagagtaaact |
34344635 |
T |
|
| Q |
132 |
gcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
||| || || |||| ||| || |||| |||||| || | |||||||||| ||||||||| | |||||| |||||| |
|
|
| T |
34344636 |
gcaccaagtgatctgcaataatattagagtccaccccaagacaaccaatccagtcacgcaccagttgccacaaagatg |
34344713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 6909811 - 6909960
Alignment:
| Q |
58 |
ccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgtta |
157 |
Q |
| |
|
||||| |||||||||| |||||||| || ||| | ||||| ||||| |||||||||| |||| |||||||||||| || || |||| ||| || ||| |
|
|
| T |
6909811 |
ccaagaacacaaaagccaaataagccacatgaa--aacttttagcttttccaacacctgtcaaaagagtaaactgcaccaagtgatctgcaataatatta |
6909908 |
T |
|
| Q |
158 |
gggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
| |||||| || | |||||||||| ||||||||| | |||||| |||||| |
|
|
| T |
6909909 |
gagtccaccccaagacaaccaatccagtcacgcaccagatgccacaaagatg |
6909960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41841 - 42041
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |||||||||| || |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
41841 |
agggacaatattaattgaattattgaaaagacggttgttacgttcactccacaaaacccaagcacacaacagccaaataagctgcaagaatgatcttttt |
41940 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41941 |
gctttaccaacacctgtcaaatgagtaaactgcatcagatgatctgtaatgatgttagggtccactcctgaaaaaccaatccaatcatgcacctgctgcc |
42040 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
42041 |
a |
42041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 46639427 - 46639219
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||| |||||| || |||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
46639427 |
agggacaatattaatagaattattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatcttttt |
46639328 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
46639327 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgatgttagagtccactcctaaaaaaccaatccaatcgcgcacctgctgcc |
46639228 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
46639227 |
acaaagatg |
46639219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 26693630 - 26693831
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||||| |||||||||| || ||| | |||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
26693630 |
agggacaagattaacagacttattgaaaagacggttgttacgttcactccacaaaacccacgaacacaaaagccaaataagctgtaagaacgatctttta |
26693729 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||| |||| ||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
26693730 |
gctttaccaacacctgccaaatgaataaactgcaccagatgatctgtaatgatgataggatccactcctaaaatacccatccaatcacgcacctgctgcc |
26693829 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
26693830 |
ac |
26693831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 50451839 - 50451978
Alignment:
| Q |
58 |
ccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgtta |
157 |
Q |
| |
|
||||| |||||| ||| |||||||||||| ||| || ||||| ||||||||||||| || |||||||||||||||||| ||||| |||| ||| || ||| |
|
|
| T |
50451839 |
ccaagaacacaagagccaaataagctgcatgaacgaacttttagctttaccaacacttgtcaaatgagtaaactgcattagatgatctgcaataatatta |
50451938 |
T |
|
| Q |
158 |
gggtccactcctgaaaaaccaatccaatcacgcacctgct |
197 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50451939 |
gagtccactccaacaaaaccaatccaatcacgcacctgct |
50451978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 4641058 - 4640972
Alignment:
| Q |
58 |
ccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtc |
144 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||||||||| ||| ||||||||||||||| || |||||||||||||| || |||||| |
|
|
| T |
4641058 |
ccaagtacacataagccaaattagctgcaagaatgatcgtttatctttaccaacacctgtcatatgagtaaactgcaccaaatggtc |
4640972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 55223354 - 55223441
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaag |
88 |
Q |
| |
|
|||||| | ||||| ||||||||| | || || |||||||| || |||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
55223354 |
agggactagattaacagaattattaattagtcgattgttacgttccttccacaaaatccaagaacacaaaagccaaataagctgcaag |
55223441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 45683879 - 45684087
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||| |||||| || |||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
45683879 |
agggacaatattaatagaattattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatcttttt |
45683978 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
45683979 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgatgttagagtccactcctaaaaaaccaatccaatcgcgcacctgctgcc |
45684078 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
45684079 |
acaaagatg |
45684087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 42675875 - 42675674
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||| |||||||||| |||||| | |||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
42675875 |
agggacaagattaacggacttattgaaaagacggttgttacgttcactccacaaaatccacgaacacaaaagccaaataagctgtaagaacgatctttta |
42675776 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
42675775 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgataatagggtccactcctaaaataccaatccaatcacgcacctgctgcc |
42675676 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
42675675 |
ac |
42675674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 20822917 - 20822726
Alignment:
| Q |
18 |
aattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgc |
117 |
Q |
| |
|
||||||| || | |||| ||||||| |||||||||| || |||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20822917 |
aattattgaatatacgggtgttacgttcactccacaaaacccaagcactcaaaagccagataagctgcaagaacgatctttttgctttaccaacacctgc |
20822818 |
T |
|
| Q |
118 |
caaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
20822817 |
caaatgagtaaactgcaccagatgatctgtaatgatgttatggtccactcctaaaacaccaatccaatctcgcacctgctgccacaaagatg |
20822726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 15484189 - 15484020
Alignment:
| Q |
32 |
cggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaact |
131 |
Q |
| |
|
||||||||||| ||| |||||| || ||||| |||||||||| |||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15484189 |
cggttgttacgttcattccacacaacccaagaacacaaaagccaaataagctgcatgaacgagctttttgctttaccaacacctgtcaaatgagtaaact |
15484090 |
T |
|
| Q |
132 |
gcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
||| |||||| |||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
15484089 |
gcaccagatgatctgcaatgatgttagagtccactccactaaaaccaatccaatcgcgcacctgctgcca |
15484020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36708584 - 36708784
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||| | ||||| ||||||||| || || ||||||||||| ||| |||||| | ||||| |||||||||| ||||||| |||| ||| || |||||| |
|
|
| T |
36708584 |
agggactagattaacagaattattgaacagtcggttgttacgttcattccacactacccaagaacacaaaagccaaataagttgcatgaacgaacttttt |
36708683 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| ||||| |||| |||||| ||| ||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
36708684 |
gctttaccaacacatgccaaatgagtaaattgcactagatgatctgcaatgatattatagtccactccaataataccaatccaatcgcgcacctgctgcc |
36708783 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
36708784 |
a |
36708784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 18369335 - 18369192
Alignment:
| Q |
58 |
ccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgtta |
157 |
Q |
| |
|
||||| |||||| ||| ||||||| |||| |||||| ||||| |||||||||||||||| ||||| |||||||| || |||||| |||| ||| | ||| |
|
|
| T |
18369335 |
ccaagaacacaagagccaaataagttgcatgaatgaacttttagctttaccaacacctgtcaaataagtaaactccaccagatgatctgcaatagtatta |
18369236 |
T |
|
| Q |
158 |
gggtccactcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
| ||||||||| | |||| |||| ||||| |||||||||||||| |
|
|
| T |
18369235 |
gagtccactccagcaaaatcaattcaatcgcgcacctgctgcca |
18369192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 9319542 - 9319432
Alignment:
| Q |
31 |
acggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaac |
130 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| |||||||||| |||||| |||| ||| || | ||| | ||||| |||||| || |||| ||||| |
|
|
| T |
9319542 |
acggttgttacgttcactccacacaacccaagtacacaaaagccaaataaattgcatgaacgagcgtttaacattaccgccacctgtcatatgaataaac |
9319443 |
T |
|
| Q |
131 |
tgcatcagatg |
141 |
Q |
| |
|
|||| |||||| |
|
|
| T |
9319442 |
tgcagcagatg |
9319432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 9163466 - 9163433
Alignment:
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgca |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
9163466 |
gctttaccaacacctgccaaataagtaaactgca |
9163433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28400987 - 28400779
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||| |||||| || |||||||||||| | | |||||||||||||||| ||||||||| |
|
|
| T |
28400987 |
agggacaatattaatagaattattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacaaccaaataagctgcaagaacgatcttttt |
28400888 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
28400887 |
gctttaccaacacctgccaaatgagtaaactgcaccagatgatctgtaatgatgttagagtccactcctaaaaaaccaatccaatcgcgcacctgctgcc |
28400788 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
28400787 |
acaaagatg |
28400779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 37643210 - 37643401
Alignment:
| Q |
10 |
attaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttacca |
109 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| ||||| ||| | |||| |||||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
37643210 |
attaacagaattattgaatagacggttgttacgttcacttaacaatactcaagaacacaaaagccaaataagctgcaataacgatctttttgctttacca |
37643309 |
T |
|
| Q |
110 |
acacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
37643310 |
acacctgccaaatgagtaaactgcaccagatgatctgtaatgatattagggtccactcctaaaataccaatccaatcacgcatctgctgcca |
37643401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16212888 - 16213088
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||| | ||||| ||||||||| || ||| |||||||||| |||||||||| | ||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
16212888 |
agggactagattaacagaattattgaatagatggttgttacgttcactccacaatacccaagaacacaaaagccaaataagctgcaagaacgatcttttt |
16212987 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| || ||| |||| |||||| ||||||||||||||| ||| |||||| |||||||||| ||||||| |
|
|
| T |
16212988 |
gctttaccaacacctgccaaataagtaaaatgcaccacatgatctgtaatgatattagggtccactcctaaaataccaatttaatcacgcacttgctgcc |
16213087 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
16213088 |
a |
16213088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 8066633 - 8066455
Alignment:
| Q |
31 |
acggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaac |
130 |
Q |
| |
|
|||||||||||| ||| |||| | || ||||| ||||||||| |||||||| ||| |||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
8066633 |
acggttgttacgttcattccatataacccaagaacacaaaagtcaaataagccgcatgaatgaacttttaactttaccaacacctgccatatgagtaaac |
8066534 |
T |
|
| Q |
131 |
tgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
|||| || ||| | || ||| || |||| |||||| || |||| |||||||||| |||||||| |||||| |||||| |
|
|
| T |
8066533 |
tgcaccaaatgatatgcaataatattagagtccaccccaagaaaatcaatccaatcgcgcacctgttgccacaaagatg |
8066455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 33913095 - 33913187
Alignment:
| Q |
20 |
ttattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaaca |
112 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||| || ||||| |||||||||| |||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
33913095 |
ttattgaaaagacagttgttacgttcactccacaaaacccaagaacacaaaagccaaataagctgtaagaacgatcttttagctttaccaaca |
33913187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 35487605 - 35487756
Alignment:
| Q |
58 |
ccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgtta |
157 |
Q |
| |
|
||||| |||||||||| |||||||| ||| ||| || ||||| ||||| ||||||| || || |||||||||||||| || || |||| ||| || ||| |
|
|
| T |
35487605 |
ccaagaacacaaaagccaaataagccgcatgaaagaacttttagcttttccaacacatgtcatatgagtaaactgcaccaagtgatctgcaataatatta |
35487704 |
T |
|
| Q |
158 |
gggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
| |||||| || | |||||||||| ||||||||| | |||||| |||||| |
|
|
| T |
35487705 |
gagtccaccccaagacaaccaatccactcacgcaccagttgccacaaagatg |
35487756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24378480 - 24378688
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||| |||||||||| || ||||| ||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
24378480 |
agggacaagattaacggacttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagtaaaataagctgtaagaacgatctttta |
24378579 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| |||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
24378580 |
gctttaccaacacctgccaaatgtgtaaactgcaccagatgatctgtaatgataatagggtccactcctaaaataccaatccaatcacgcacctgctgcc |
24378679 |
T |
|
| Q |
201 |
actaagatg |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
24378680 |
acaaagatg |
24378688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 21548551 - 21548752
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||||| |||||||||| || ||||| |||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
21548551 |
agggacaagattaacagacttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagctgtaagaacgatctttta |
21548650 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| |||| |||||| |||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
21548651 |
gctttaccaacacacgccaaatgagtaaactgcaccagatgatctgtaatgataatagggtccactcctaaaataccaatccaatcacgcacctactgcc |
21548750 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
21548751 |
ac |
21548752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 26010594 - 26010776
Alignment:
| Q |
20 |
ttattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgcca |
119 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || ||||| |||||||||| ||||||| || ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
26010594 |
ttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagttgtaagaacgatcttttagctttaccaacacctgcca |
26010693 |
T |
|
| Q |
120 |
aatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccac |
202 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||| ||| |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
26010694 |
aatgagtaaactgcaccagatgatctgtaatgataatagagtccactcctaaaataccaatccaatcgcgcacctgctgccac |
26010776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 6008203 - 6008392
Alignment:
| Q |
3 |
ggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgc |
102 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||| |||||||||| || ||||| | ||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
6008203 |
ggacaagattaacggaattattgaaaagacggttgttacgttcactccacaaaacccaagaatacaaaagtcaaataagctgtaagaacgatctttttgc |
6008302 |
T |
|
| Q |
103 |
tttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcac |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| |||| |||||| |||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
6008303 |
tttaccaacacctgccaaatgagtaaagtgcaccagatgatctgtaatgataatagggtacactcctaaaataccaatccaatcacgcac |
6008392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 6004688 - 6004834
Alignment:
| Q |
18 |
aattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgc |
117 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||| || ||||| |||| ||||||||||||||||||||| |
|
|
| T |
6004688 |
aattattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagtcaaataagttgtaagaacgatcattttgctttaccaacacctgc |
6004787 |
T |
|
| Q |
118 |
caaatgagtaaactgcatcagatggtctgaaatgatgttagggtcca |
164 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||||| ||||||||| |
|
|
| T |
6004788 |
caaatgagtaaactgcaccagatgatctgtaatgataatagggtcca |
6004834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 9565135 - 9565270
Alignment:
| Q |
66 |
acaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccac |
165 |
Q |
| |
|
|||| ||| |||||||||||| ||| || ||||| |||||||||||| | | ||||||||||||||||| |||||| |||| ||| || |||| |||||| |
|
|
| T |
9565135 |
acaagagccaaataagctgcatgaacgaacttttagctttaccaacatccgtcaaatgagtaaactgcaccagatgatctgcaataatattagagtccac |
9565234 |
T |
|
| Q |
166 |
tcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||| |
|
|
| T |
9565235 |
tccaacaaaaccaatccaatcacgcatctgctgcca |
9565270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 31297551 - 31297381
Alignment:
| Q |
31 |
acggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaac |
130 |
Q |
| |
|
|||||||||||| ||| | || | || ||||| |||||||||| |||||||| ||| |||||| ||||| ||||||||||||||| || ||||||||| |
|
|
| T |
31297551 |
acggttgttacgttcatttcatataacccaagaacacaaaagccaaataagccgcatgaatgaacttttagctttaccaacacctctcatatgagtaaat |
31297452 |
T |
|
| Q |
131 |
tgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcca |
201 |
Q |
| |
|
|||| || ||| ||| || || ||| |||||| || |||||||||||||||| ||||| || ||||| |
|
|
| T |
31297451 |
tgcaccaaatgatctactataatattatagtccaccccaaaaaaaccaatccaatcgcgcacatgttgcca |
31297381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 23066456 - 23066279
Alignment:
| Q |
32 |
cggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatctttttgctttaccaacacctgccaaatgagtaaact |
131 |
Q |
| |
|
||||| ||||| ||| |||| | || ||||| |||||||||| |||||||| ||| ||| || ||||| |||| |||||||||| || | ||| ||||| |
|
|
| T |
23066456 |
cggttattacgttcattccatataacccaagaacacaaaagccaaataagccgcacgaaagaacttttaccttttccaacacctgtcataagaggaaact |
23066357 |
T |
|
| Q |
132 |
gcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgccactaagatg |
209 |
Q |
| |
|
||| || || |||| ||| || |||| |||||| || | |||||||||||||||||||| | |||||| |||||| |
|
|
| T |
23066356 |
gcaccaagtgatctgcaataatattagagtccaccccaagacaaccaatccaatcacgcaccagttgccacaaagatg |
23066279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 72140 - 71940
Alignment:
| Q |
1 |
agggacaatattaaaagaattattcaaaagacggttgttacgctcactccacagaatccaagcacacaaaagctaaataagctgcaagaatgatcttttt |
100 |
Q |
| |
|
|||||| | ||||| | ||||||| || || ||||||||||| ||| |||||| | ||||| |||||||||| |||||||||||||||| || |||||| |
|
|
| T |
72140 |
agggactagattaacataattattgaatagtcggttgttacgttcattccacaatacccaagaacacaaaagccaaataagctgcaagaacgaacttttt |
72041 |
T |
|
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgcatcagatggtctgaaatgatgttagggtccactcctgaaaaaccaatccaatcacgcacctgctgcc |
200 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||||||||||||| ||| ||||||||| || ||||| ||||||| |
|
|
| T |
72040 |
acttcaccaacacctgccaaatgagtgaactgcaccagatgatctgcaatgatattagggtccactcctaaaataccaatccagtcgcgcacatgctgcc |
71941 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
71940 |
a |
71940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 16873829 - 16873796
Alignment:
| Q |
101 |
gctttaccaacacctgccaaatgagtaaactgca |
134 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
16873829 |
gctttaccaacacctgccaaataagtaaactgca |
16873796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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