View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_low_68 (Length: 213)

Name: NF21656_low_68
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_low_68
NF21656_low_68
[»] chr2 (8 HSPs)
chr2 (83-167)||(41579167-41579251)
chr2 (89-197)||(41589176-41589284)
chr2 (93-197)||(41556535-41556639)
chr2 (91-192)||(41570251-41570352)
chr2 (20-59)||(41579104-41579143)
chr2 (20-59)||(41570098-41570137)
chr2 (20-59)||(41589043-41589082)
chr2 (20-59)||(41556401-41556440)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 41579167 - 41579251
Alignment:
Q  83 attgctactttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41579167 attgctactttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat 41579251  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 41589176 - 41589284
Alignment:
Q  89 actttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagtta 188  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  41589176 actttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaatta 41589275  T
Q  189 caacccttt 197  Q
    |||||||||    
T  41589276 caacccttt 41589284  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 41556535 - 41556639
Alignment:
Q  93 tgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagttacaac 192  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| | | |||||    
T  41556535 tgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaattatagactcatacaactataataacaac 41556634  T
Q  193 ccttt 197  Q
    |||||    
T  41556635 ccttt 41556639  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 41570251 - 41570352
Alignment:
Q  91 tttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagttaca 190  Q
    ||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||  |||||||||||| |||||    
T  41570251 tttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaactacaattaca 41570350  T
Q  191 ac 192  Q
    ||    
T  41570351 ac 41570352  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 41579104 - 41579143
Alignment:
Q  20 caacttactgaaaaatcatttcatgatgttattgttcaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41579104 caacttactgaaaaatcatttcatgatgttattgttcaca 41579143  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 41570098 - 41570137
Alignment:
Q  20 caacttactgaaaaatcatttcatgatgttattgttcaca 59  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  41570098 caacttactgagaaatcatttcatgatgttattgttcaca 41570137  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 41589043 - 41589082
Alignment:
Q  20 caacttactgaaaaatcatttcatgatgttattgttcaca 59  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  41589043 caacttactgaaaaatcatttcatgatgttattgctcaca 41589082  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 41556401 - 41556440
Alignment:
Q  20 caacttactgaaaaatcatttcatgatgttattgttcaca 59  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  41556401 caactcactgagaaatcatttcatgatgttattgttcaca 41556440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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