View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21656_low_7 (Length: 593)

Name: NF21656_low_7
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21656_low_7
NF21656_low_7
[»] chr8 (10 HSPs)
chr8 (1-582)||(44633161-44633737)
chr8 (8-148)||(39269523-39269662)
chr8 (45-140)||(39568333-39568428)
chr8 (63-162)||(45378355-45378451)
chr8 (186-253)||(39270419-39270486)
chr8 (186-253)||(39567461-39567528)
chr8 (186-253)||(45377513-45377580)
chr8 (206-243)||(45378302-45378339)
chr8 (206-243)||(39568269-39568306)
chr8 (211-243)||(39269687-39269719)
[»] chr6 (7 HSPs)
chr6 (4-582)||(5659588-5660152)
chr6 (182-582)||(21612132-21612531)
chr6 (4-148)||(21282915-21283058)
chr6 (182-274)||(21612570-21612663)
chr6 (186-253)||(21283557-21283624)
chr6 (113-148)||(21612691-21612726)
chr6 (45-82)||(21612771-21612808)
[»] scaffold0031 (5 HSPs)
scaffold0031 (4-148)||(123522-123665)
scaffold0031 (4-148)||(134398-134541)
scaffold0031 (186-253)||(128992-129059)
scaffold0031 (211-243)||(123694-123726)
scaffold0031 (211-243)||(134565-134597)
[»] chr4 (16 HSPs)
chr4 (4-148)||(702467-702610)
chr4 (4-148)||(770766-770909)
chr4 (4-146)||(756585-756726)
chr4 (4-140)||(16039503-16039638)
chr4 (4-140)||(35060278-35060413)
chr4 (186-253)||(702033-702100)
chr4 (186-253)||(757085-757152)
chr4 (186-253)||(770332-770399)
chr4 (186-253)||(35055737-35055804)
chr4 (186-253)||(16038664-16038731)
chr4 (206-243)||(16039437-16039474)
chr4 (206-243)||(35060215-35060252)
chr4 (113-148)||(33075036-33075071)
chr4 (211-243)||(702411-702443)
chr4 (211-243)||(756759-756791)
chr4 (211-243)||(770710-770742)
[»] chr1 (5 HSPs)
chr1 (4-148)||(51599250-51599393)
chr1 (186-253)||(51598362-51598429)
chr1 (4-100)||(16962108-16962203)
chr1 (186-253)||(16962999-16963066)
chr1 (211-243)||(51599192-51599224)
[»] chr3 (8 HSPs)
chr3 (4-137)||(21816007-21816139)
chr3 (192-236)||(36982928-36982972)
chr3 (192-236)||(37008367-37008411)
chr3 (113-148)||(36982856-36982891)
chr3 (113-148)||(37008295-37008330)
chr3 (182-220)||(21816177-21816215)
chr3 (62-103)||(36982826-36982867)
chr3 (62-103)||(37008265-37008306)
[»] chr7 (7 HSPs)
chr7 (4-134)||(21709256-21709386)
chr7 (4-103)||(26025728-26025826)
chr7 (186-253)||(26025287-26025354)
chr7 (186-253)||(21710193-21710259)
chr7 (113-148)||(26025704-26025739)
chr7 (211-243)||(21709415-21709447)
chr7 (211-243)||(26025648-26025680)
[»] chr5 (1 HSPs)
chr5 (104-137)||(24648582-24648615)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 44633737 - 44633161
Alignment:
Q  1 cttttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttc 100  Q
    |||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633737 cttttacataaattggtctcttccgttaattttattaaaaaaa-cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttc 44633639  T
Q  101 ttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaatccagaagaagnnnnnnncttaaacaacaaaactcat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||    
T  44633638 ttcctcctcgccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaacccagaagaagaaaaaaacttaaacaacaaaactcat 44633539  T
Q  201 caaataaaactttacctttatcttatgaaatccaaatctaaacccattatcattttatttgtgaatttctttaagatttggaatgactaannnnnnnnat 300  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         |    
T  44633538 caaataaaattttacctttatcatatgaaatccaaatctaaacccattatcattttatttctgaatttctttaagatttggaatgactaattttt----t 44633443  T
Q  301 tttattacattgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatt 400  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44633442 tttattacaatgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttctcgtaacaccataacaccatcaaatgaaaatt 44633343  T
Q  401 tgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaatcatcttcgagtttt 500  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  44633342 cgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaattgcaaatcatcttcaagtttt 44633243  T
Q  501 tcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgctcctc 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44633242 tcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgttcctc 44633161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 39269523 - 39269662
Alignment:
Q  8 ataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 107  Q
    ||||||||||||| |||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39269523 ataaattggtctcttccgttaattttattaaaaaaa-cgttaacttaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcc 39269621  T
Q  108 tcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39269622 tcaccttcatcttcttcaacaaatcttcataaaaccttcat 39269662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 39568428 - 39568333
Alignment:
Q  45 cgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 140  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39568428 cgttaactcaagcacacgtgtcattttcgcattggttgaaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaa 39568333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 45378451 - 45378355
Alignment:
Q  63 tgtcattttcgcattggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaa 162  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||   |||||||||||    
T  45378451 tgtcattttcgcaatggttggaatttatattcatcttcctcctcctcaccttcat---cttcaacaaatcttcataaaaccttcataacccttcatacaa 45378355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 39270419 - 39270486
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||    
T  39270419 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatctaaatctaaaccctttatcat 39270486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 39567528 - 39567461
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  39567528 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 39567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 45377580 - 45377513
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||    
T  45377580 aacaacaaaactcatcaaataaaactttacatttatcatttgaaatccaaatctaaaccctttatcat 45377513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 45378339 - 45378302
Alignment:
Q  206 aaaactttacctttatcttatgaaatccaaatctaaac 243  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45378339 aaaactttacctttatcatatgaaatccaaatctaaac 45378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 39568306 - 39568269
Alignment:
Q  206 aaaactttacctttatcttatgaaatccaaatctaaac 243  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  39568306 aaaactttacctttatcatttgaaatccaaatctaaac 39568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 39269687 - 39269719
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  39269687 tttacctttatcatatgaaatccaaatctaaac 39269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 582
Target Start/End: Complemental strand, 5660152 - 5659588
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||  | |||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5660152 ttacataaattggttccttccgttaattttattaaaaaatatgttaactcaagcacacgtgtcattttcacattggttggaatttatattcatcttcttc 5660053  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcatacaaatccagaagaagnnnnnnncttaaacaacaaaactcatcaa 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||    || | |||   | || ||        |||||||||||||||||||||     
T  5660052 ctcctcatcttcatcttcttcaacaaatcttcataaaaccttcatacaaacccagagaaa--aaaaaaaaaaaaaaaacttaaacaacaaaactcatcat 5659955  T
Q  204 ataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttt-atttgtgaatttctttaagatttggaatgactaannnnnnnnattt 302  Q
    |||| |||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||         |||    
T  5659954 ataatactttacctttatcatatgaaatcctaatctaaactcattatcattttaatttgtgaatttctttaagatttggaatgactaaatttt----ttt 5659859  T
Q  303 tattacattgacaacagcttcacccataacaccataagtagtcttcttcttcttccataggtcttcccgtaacaccataacaccatcaaatgaaaatttg 402  Q
    |||| || |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||         ||||||||||||||| ||||||| |    
T  5659858 tattccaatgacaacaacttcacccataacaccataagtcgtcgtcttcttcttccataggtcttc--------tcataacaccatcaaacgaaaattcg 5659767  T
Q  403 ttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatt----tgcgttgttgaaactgcaaatcgcaaatcatcttcgagtt 498  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||       |||| |||||| |||||| ||||    
T  5659766 ttttcaattcctcttaaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcatgcgttgttg-------aaattgcaaataatcttcaagtt 5659674  T
Q  499 tttcgtgttcttgttcttattcatgtgttcctcttttgatt-gggtgctgaaa-cgtgttccaattctccttcatctgtgctcctc 582  Q
    ||| ||||||| ||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||| |||||    
T  5659673 ttttgtgttctagttcttactcatgtgttcctcttttgattggggtactgaaatcgtgttccaattctccttcatatgtgttcctc 5659588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 182 - 582
Target Start/End: Complemental strand, 21612531 - 21612132
Alignment:
Q  182 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttta-tttgtgaatttctttaagatttg 280  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||| |||||||||||| ||||||||||    
T  21612531 cttaaacaacaaaacttatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcactttaatttgtgaatttccttaagatttg 21612432  T
Q  281 gaatgactaannnnnnnnattttattacattgacaacagcttcacccataacaccataagtagtcttcttcttcttc---------cataggtcttcccg 371  Q
    ||||||||||         ||| ||| || |||||||||||||||||||||||||||||||  ||||||||||||||         ||||||||||| |     
T  21612431 gaatgactaaatttt----tttcattccaatgacaacagcttcacccataacaccataagtcttcttcttcttcttcttcttcttccataggtcttctc- 21612337  T
Q  372 taacaccataacaccatcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaa 471  Q
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21612336 -------ataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaaaatctttgatttgcgttgttgaaa 21612244  T
Q  472 ctgcaaatcgcaaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaa-cgtgttccaattctccttca 570  Q
    |||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  21612243 ctgcaaatcggaaatcatcttcaagtttttcatgttctagttcttattcatgtgttcctcttttgattgggtacttaaatcgtgttccaattctccttca 21612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 21282915 - 21283058
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  21282915 ttacataaattggtcccttccgttaattttattaaaaaaa-cgttaactcaagcacatgtgtcattttcgcattagttggaatttatcttcatcttcttc 21283013  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21283014 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 21283058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 21612663 - 21612570
Alignment:
Q  182 cttaaacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcatttt-atttgtgaatttctttaa 274  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| ||||    
T  21612663 cttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatcaaaactcattatcattttaatttgtgaatttccttaa 21612570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 21283557 - 21283624
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||    
T  21283557 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccatttatcat 21283624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 21612726 - 21612691
Alignment:
Q  113 ttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612726 ttcatcttcttcaacaaatcttcataaaaccttcat 21612691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 21612808 - 21612771
Alignment:
Q  45 cgttaactcaagcacacgtgtcattttcgcattggttg 82  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21612808 cgttaactcaagcacacatgtcattttcgcattggttg 21612771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 123522 - 123665
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123522 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 123620  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  123621 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 134398 - 134541
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134398 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 134496  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  134497 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 128992 - 129059
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  128992 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 123694 - 123726
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  123694 tttacctttatcatatgaaatccaaatctaaac 123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 134565 - 134597
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  134565 tttacctttatcatatgaaatccaaatctaaac 134597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 702610 - 702467
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702610 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 702512  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  702511 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 702467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 770909 - 770766
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  770909 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 770811  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  770810 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 756585 - 756726
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756585 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 756683  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  756684 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttc 756726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 16039638 - 16039503
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16039638 ttacataaattggtcccttccgttaattttattaaaaaaa-cgttaactcaaacacacatgtcattttcgcattggttagaatttatattcatcttcttc 16039540  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaa 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  16039539 ctcctcaccttcatcttcttcaacaaatcttcataaa 16039503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 35060413 - 35060278
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35060413 ttacataaattggtcccttccgttaattttattaaaaaaa-cattaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttc 35060315  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaa 140  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35060314 ctcctcaccttcaccttcttcaacaaatcttcataaa 35060278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 702100 - 702033
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  702100 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 702033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 757085 - 757152
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  757085 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 757152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 770399 - 770332
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  770399 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 770332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 35055804 - 35055737
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| |||||||    
T  35055804 aacaacaaaactcatcagataaaattttacatttatcatatgaaatccaaatctaaaccctttatcat 35055737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 16038731 - 16038664
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||||||||||||||||| |||||||    
T  16038731 aacaacaaaactcatcagataaaactttacatttcttatatgaaatccaaatctaaaccctttatcat 16038664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 16039474 - 16039437
Alignment:
Q  206 aaaactttacctttatcttatgaaatccaaatctaaac 243  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16039474 aaaactttacctttatcatatgaaatccaaatctaaac 16039437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 35060252 - 35060215
Alignment:
Q  206 aaaactttacctttatcttatgaaatccaaatctaaac 243  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35060252 aaaactttacctttatcatatgaaatccaaatctaaac 35060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 33075071 - 33075036
Alignment:
Q  113 ttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33075071 ttcatcttcttcatcaaatcttcataaaaccttcat 33075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 702443 - 702411
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  702443 tttacctttatcatatgaaatccaaatctaaac 702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 756759 - 756791
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  756759 tttacctttatcatatgaaatccaaatctaaac 756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 770742 - 770710
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  770742 tttacctttatcatatgaaatccaaatctaaac 770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 51599393 - 51599250
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51599393 ttacataaattggtcccttccgttaattttattaaaaaaa-cgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttc 51599295  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    |  ||||||||||||||||||||||||||||||||||||||||||    
T  51599294 caactcaccttcatcttcttcaacaaatcttcataaaaccttcat 51599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 51598429 - 51598362
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  51598429 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 51598362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 16962108 - 16962203
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttc 100  Q
    ||||||||||||||| | |||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16962108 ttacataaattggtcccttccgttaattttattaaaaaaat-gttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 16962203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 16962999 - 16963066
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  16962999 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 16963066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 51599224 - 51599192
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  51599224 tttacctttatcatatgaaatccaaatctaaac 51599192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 21816007 - 21816139
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21816007 ttacataaattggtcccttccgttaattttattaaaaaaa-cgttaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttc 21816105  T
Q  104 ctcctcaccttcatcttcttcaacaaatcttcat 137  Q
    |||||| |||||||||||||||||||||||||||    
T  21816106 ctcctcgccttcatcttcttcaacaaatcttcat 21816139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 36982928 - 36982972
Alignment:
Q  192 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 236  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  36982928 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 36982972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 37008367 - 37008411
Alignment:
Q  192 aaaactcatcaaataaaactttacctttatcttatgaaatccaaa 236  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||    
T  37008367 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 37008411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 36982856 - 36982891
Alignment:
Q  113 ttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36982856 ttcatcttcttcatcaaatcttcataaaaccttcat 36982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 37008295 - 37008330
Alignment:
Q  113 ttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37008295 ttcatcttcttcatcaaatcttcataaaaccttcat 37008330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 21816177 - 21816215
Alignment:
Q  182 cttaaacaacaaaactcatcaaataaaactttaccttta 220  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  21816177 cttaaacaacaaaattcatcaaaaaaaactttaccttta 21816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 36982826 - 36982867
Alignment:
Q  62 gtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  36982826 gtgtcatcttcgcattggctggaatatatattcatcttcttc 36982867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 37008265 - 37008306
Alignment:
Q  62 gtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  37008265 gtgtcatcttcgcattggctggaatatatattcatcttcttc 37008306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 21709256 - 21709386
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||| | |||||||||||||||        ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  21709256 ttacataaattggtcccttccgttaattttattaaaaaaaacgttaactcaagcacacgtgtcatttttgcattggttagaatttatattcatcttcttc 21709355  T
Q  104 ctcctcaccttcatcttcttcaacaaatctt 134  Q
    |  |||||||||||||| |||||||||||||    
T  21709356 caactcaccttcatctttttcaacaaatctt 21709386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 26025826 - 26025728
Alignment:
Q  4 ttacataaattggtctcatccgttaattttattnnnnnnnncgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 103  Q
    ||||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26025826 ttacataaattggtctcttccgttaattttattaaaaaaat-gttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 26025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 26025354 - 26025287
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  26025354 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 26025287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 21710193 - 21710259
Alignment:
Q  186 aacaacaaaactcatcaaataaaactttacctttatcttatgaaatccaaatctaaacccattatcat 253  Q
    ||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||    
T  21710193 aacaacaaaacacatcaaa-aaaactttacatttatcatatgaaatccaaatctaaaccctttatcat 21710259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 26025739 - 26025704
Alignment:
Q  113 ttcatcttcttcaacaaatcttcataaaaccttcat 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025739 ttcatcttcttcaacaaatcttcataaaaccttcat 26025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 21709415 - 21709447
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  21709415 tttacctttatcatatgaaatccaaatctaaac 21709447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 26025680 - 26025648
Alignment:
Q  211 tttacctttatcttatgaaatccaaatctaaac 243  Q
    |||||||||||| ||||||||||||||||||||    
T  26025680 tttacctttatcatatgaaatccaaatctaaac 26025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 24648615 - 24648582
Alignment:
Q  104 ctcctcaccttcatcttcttcaacaaatcttcat 137  Q
    ||||||||||||||| ||||||||||||||||||    
T  24648615 ctcctcaccttcatcatcttcaacaaatcttcat 24648582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University