View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_1 (Length: 762)
Name: NF21657_high_1
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 255 - 746
Target Start/End: Original strand, 42636603 - 42637094
Alignment:
| Q |
255 |
atttctaagcaacttaatagtatatttgggttagccaataatctccaataacctataaaagtaattatttctatccgcactccatgattttcagtaacag |
354 |
Q |
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| T |
42636603 |
atttctaagcaacttaatagtatatttgggttagccaataatctccaataacctataaaagtaattatttctatccgcactccatgattttcagtaacag |
42636702 |
T |
|
| Q |
355 |
tcttgcgcgacatgatgcgtcttaagcagtgacgagacactttcaactcttcacaattgcgtgacacgtggattgtagcacgcatcgtgcatgtactagt |
454 |
Q |
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| T |
42636703 |
tcttgcgcgatgtgatgcgtcttaagcagtgacgagacactttcaactcttcacaattgcatgacatgtggattgtagcacgcatcgtgcatgtactagt |
42636802 |
T |
|
| Q |
455 |
agtggatccttttgattttcttcattccttgtcatatttctcctcactgaaatatttgtagtgactatacatnnnnnnntcacctgatataccatctaag |
554 |
Q |
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| T |
42636803 |
agtggatccttttgattttcttcattccttgtcatatttctcctcactgaaacatttgtagtgactatacatcaaaaaatcacctgatataccatctaag |
42636902 |
T |
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| Q |
555 |
aaagtataacatgaccacaaaattgtctagttcaggtgatttagcatgtttaaaggtcttgtatgcctaataattattccatactcatgcattatattat |
654 |
Q |
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| T |
42636903 |
aaagtataacatgaccacaaaattgtctagttcaggtgatttagcatgtttaaaggtcttgtatgcctaatagttattccatactcatgcattatattat |
42637002 |
T |
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| Q |
655 |
ttacacaaactcaactaaaacagttaaaaacctgttagaatgactctaaatactgctaaaaacattatattgcagactattatcatttctct |
746 |
Q |
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| T |
42637003 |
ttacacaaactcaactaaaacagttaaaaacctgttagaatgactctaaatactgctaaaaacattatattacagactattatcatttctct |
42637094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 42636023 - 42636276
Alignment:
| Q |
9 |
agtagcataggggaaaaattgaagtaaatcagtgcattggcgatgcatgtgatacaatgctatgcaagtaatcataaaggtaca--------gtatattt |
100 |
Q |
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| T |
42636023 |
agtaacataggggaaaaattgaagtaaatcagtgcattggtgatgcatgtgatacgatgctatgcaagtaatcataaaggtacaacatgatagtatattt |
42636122 |
T |
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| Q |
101 |
ggagatacaatgctatgcatgtgatcataaaggtgcaacatgatacacagtgcatgggtgatgcatgtatcaatcactaatcaaaagaacactaatcatt |
200 |
Q |
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| T |
42636123 |
ggagatacaatgctatgcatgtgatcataaaggtacaacatgatacacagtgcatgggtgatgcatgtatcaatcactaatcaaaagaacactaatcatt |
42636222 |
T |
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| Q |
201 |
ttaccttgtgttgtttgtctcttgtatttatactttataggtatgtgtgactta |
254 |
Q |
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| T |
42636223 |
ttaccttgtgttgtttgtctcttgtatttatactttataggtatgtgtgactta |
42636276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 674
Target Start/End: Original strand, 33036922 - 33037062
Alignment:
| Q |
534 |
tcacctgatataccatctaagaaagtataacatgaccacaaaattgtctagttcaggtgatttagcatgtttaaaggtcttgtatgcctaataattattc |
633 |
Q |
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|||| ||||||| | | ||||||||||||||||||||||||| |||||| ||| || ||||| ||||||| ||||||||||| |||||||| | | | |
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| T |
33036922 |
tcacttgatatatcttgtaagaaagtataacatgaccacaaagttgtctggtttgggagatttgtcatgtttcaaggtcttgtacgcctaatagctctac |
33037021 |
T |
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| Q |
634 |
catactcatgcattatattatttacacaaactcaactaaaa |
674 |
Q |
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| T |
33037022 |
catgctcatatattgatttatttacaaaaactcaactaaaa |
33037062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 49601162 - 49601203
Alignment:
| Q |
34 |
aaatcagtgcattggcgatgcatgtgatacaatgctatgcaa |
75 |
Q |
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| T |
49601162 |
aaatcagtgcattggtgatgtatgtgattcaatgctatgcaa |
49601203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 15295595 - 15295636
Alignment:
| Q |
633 |
ccatactcatgcattatattatttacacaaactcaactaaaa |
674 |
Q |
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| T |
15295595 |
ccatactcatccattaaattatttacataaactcaactaaaa |
15295636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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