View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_2 (Length: 759)
Name: NF21657_high_2
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_2 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 328 - 737
Target Start/End: Original strand, 149988 - 150397
Alignment:
| Q |
328 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaataggttacaagagttagaccaacaag |
427 |
Q |
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| T |
149988 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaaggaaataggttacaagagttagaacaacaag |
150087 |
T |
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| Q |
428 |
ttcatcaacaactaagaaaagggaaatatgtaagtcctgtttggaaacctaatgaaatgctatggttagcaagagcatggaaagaacaataccaaacaag |
527 |
Q |
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| T |
150088 |
ttcatcaacaactaagaaaagggaaatatgtaagtcctgtttggaaacctaatgaaatgctatggttagcaagagcatggaaagaacaataccaaacaag |
150187 |
T |
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| Q |
528 |
ctcagaaacatcttcaagaactgaacaagagatgggaatgagtagaggaaaaacaagagctgataaagacaaagaagtagctgaatttctaaacaaacat |
627 |
Q |
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| T |
150188 |
ctcagaaacatcttcaagaactgaacaagagatgggaatgagtagagggaaaacaagagctgataaagacaaagaagtagctgaatttctaaacaaacat |
150287 |
T |
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| Q |
628 |
ggtgttaatagagatgcaaaaacagcaggtacaaaatgggataacatgttaggtgagtttaggaaagtttatgaatgggaaagaggtggtgaaagagaac |
727 |
Q |
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| T |
150288 |
ggtgttaatagagatgcaaaaacagcaggtacaaaatgggataacatgttaggtgagtttaggaaagtttatgaatgggaaagaggtggtgaaagagaac |
150387 |
T |
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| Q |
728 |
aagttggtaa |
737 |
Q |
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| T |
150388 |
aagttggtaa |
150397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 149715 - 149871
Alignment:
| Q |
55 |
attgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttgaaacccaatttgaaa |
154 |
Q |
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| T |
149715 |
attgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtggtgcaagttcttcaccttttgaaacccaatttgaaa |
149814 |
T |
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| Q |
155 |
catccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
211 |
Q |
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| T |
149815 |
catccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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