View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_22 (Length: 282)
Name: NF21657_high_22
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 6957458 - 6957185
Alignment:
| Q |
3 |
ttggattctttattatatgtatatttgtttgtataaagcttgaaagaaatgcaactacctgacatctccctttgccattcttgacaaagcaaaatggatc |
102 |
Q |
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| T |
6957458 |
ttggattctttattatatgtatatttgtttgtataaagcttgaaagaaatgcaactacctgacatctccctttgccattcttgacaaagcaaaatggatc |
6957359 |
T |
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| Q |
103 |
tgttagtccttgttgaatatgaccactatgcacaccacctttcttaagattgaatttaggaactttaaggccatcaaataagggattggagccatcagat |
202 |
Q |
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| T |
6957358 |
tgttagtccttgttgaatatgaccactatgcacaccacctttcttaagattgaatttaggaactttaaggccatcaaataagggattggagccatcagat |
6957259 |
T |
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| Q |
203 |
ataccataaggtttgtttgaagtaattacagttatgtttatatactccatttcagcaaattcattttctccttt |
276 |
Q |
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| T |
6957258 |
ataccataaggtttgtttgaagtaattacagttatgtttatatactccatttcagcaaattcattttccccttt |
6957185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 49114831 - 49115055
Alignment:
| Q |
54 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttgaatatgaccactatgcacaccacctttcttaagatt |
153 |
Q |
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| T |
49114831 |
caactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaatatgaccactatggacaccacctttttcaagatt |
49114930 |
T |
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| Q |
154 |
gaatttaggaactttaaggccatcaaataagggattggagccatcagatataccataaggtttgtttgaagtaattacagttatgtttatatactccatt |
253 |
Q |
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| T |
49114931 |
gaacttgggaacttttaggccattaaataatggattggaaccatcagatattccatatggtttattagaagtaattacagttatgttcatatactccatt |
49115030 |
T |
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| Q |
254 |
tcagcaaattcattttctcctttgt |
278 |
Q |
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| T |
49115031 |
tctgcaaattcattatctcctttgt |
49115055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 49102793 - 49103015
Alignment:
| Q |
54 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttgaatatgaccactatgcacaccacctttcttaagatt |
153 |
Q |
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| T |
49102793 |
caactacctgacattttcctttgccgttcttcacaaagcaataaggatctctgagtccttgttgaatatgaccactaaggacaccacctttttcaagatt |
49102892 |
T |
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| Q |
154 |
gaatttaggaactttaaggccatcaaataagggattggagccatcagatataccataaggtttgtttgaagtaattacagttatgtttatatactccatt |
253 |
Q |
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| T |
49102893 |
gaacttaggaacttttaggccattaaataatggattggagccatctgatatcccatatggtttatttgaggcaattacagtaatgttcatatactccatt |
49102992 |
T |
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| Q |
254 |
tcagcaaattcattttctccttt |
276 |
Q |
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||||||||||||||||||||||| |
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| T |
49102993 |
tcagcaaattcattttctccttt |
49103015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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