View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_26 (Length: 263)
Name: NF21657_high_26
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 3593911 - 3594167
Alignment:
| Q |
1 |
aatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatccatcaccaccatatgtagcttttgatgacgcggtaaagggcacctaattcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3593911 |
aatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatccatcaccaccatatgtagcttttgatgacgcggtttagggcacctaattcctt |
3594010 |
T |
|
| Q |
101 |
ttgcagctatcctgcactcggatatagaaaagcttaggcaaaatgagtaattgaacccttgtatattcgaaaaatatgaaagaatgaaaaaatagcatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3594011 |
ttgcagctatcctgcactcggatatagaaaagcttaggcaaaatgagtaattgaacccttgtatattggaaaaatatgaaagaatgaaaaaatagcatat |
3594110 |
T |
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| Q |
201 |
gcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594111 |
gcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctg |
3594167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35715363 - 35715300
Alignment:
| Q |
1 |
aatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatccatcaccaccatatgta |
64 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||| ||||| |||| ||||||| |
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| T |
35715363 |
aatcagattgtatcaaaatgcaggataaaagcagtaccaataaattccataaccaggatatgta |
35715300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 35714940 - 35714880
Alignment:
| Q |
184 |
atgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttt |
244 |
Q |
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|||||| || |||| |||||||||| | ||||||| ||| ||||||||||||||||||||| |
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| T |
35714940 |
atgaaataagagcaaatgcaaacctcttaagattcctgaattccttttctgcccatgtttt |
35714880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 28933872 - 28933942
Alignment:
| Q |
182 |
gaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccattt |
252 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||||| | |||||||||||||||||||||| |||||| |
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| T |
28933872 |
gaatgaaaaaagagcaaatgcaaacctcgaaagattactcctttccttttctgcccatgtttttaccattt |
28933942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28933439 - 28933488
Alignment:
| Q |
1 |
aatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatccat |
50 |
Q |
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||||||||||||||||||| || ||||||||| |||||||||| ||||| |
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| T |
28933439 |
aatcagattgtatcaaaatccaggataaaagcaataccaataaattccat |
28933488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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