View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_27 (Length: 255)
Name: NF21657_high_27
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 703043 - 703268
Alignment:
| Q |
12 |
caaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgct |
111 |
Q |
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|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
703043 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgct |
703141 |
T |
|
| Q |
112 |
tgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703142 |
tgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
703241 |
T |
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| Q |
212 |
aattaatcaaagcagcgtataattttt |
238 |
Q |
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||||||||||||||||||||||||||| |
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| T |
703242 |
aattaatcaaagcagcgtataattttt |
703268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 712395 - 712170
Alignment:
| Q |
12 |
caaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgct |
111 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
712395 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgct |
712297 |
T |
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| Q |
112 |
tgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
712296 |
tgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
712197 |
T |
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| Q |
212 |
aattaatcaaagcagcgtataattttt |
238 |
Q |
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||||||||||||||||||||||||||| |
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| T |
712196 |
aattaatcaaagcagcgtataattttt |
712170 |
T |
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