View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_28 (Length: 254)
Name: NF21657_high_28
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 43798147 - 43797903
Alignment:
| Q |
10 |
ctccaagaatatcaataatgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagc |
109 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43798147 |
ctccaacaacatcaataatgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagc |
43798048 |
T |
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| Q |
110 |
ataaacacatcaattagctgcacaatactagtcacaaactctaacctcccaatccatcgaaagcaaactaagaatcttgttaattaagcaccaacccact |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43798047 |
ataaacacattaattagctgcacaatactagtcacaaactctaacctcccaatccatcgcaagcaaactaagaatcttgttaattaagcaccaacccact |
43797948 |
T |
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| Q |
210 |
acactagtagggttacatccccttaactttttcaccacaacttcc |
254 |
Q |
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||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
43797947 |
acactagtaggattacatccctttaaatttttcaccacaacttcc |
43797903 |
T |
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