View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_high_5 (Length: 584)
Name: NF21657_high_5
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 35745097 - 35744554
Alignment:
| Q |
1 |
ttagttaattagttggaattgtgacaaacgacgtatgaccaaaaatgtattcctttgctaggatcgggagaagtgaatcaagattaagggtcatatagct |
100 |
Q |
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| T |
35745097 |
ttagttaattagttggaattgtgacaaacgacgtatgaccaaaa-tgtattcctttgctaggatcgggagaagtgaatcaagattaagggtcatatagct |
35744999 |
T |
|
| Q |
101 |
gttgaataatgatgatgttaagaattggtgcatgaaacagaaaagggaggttgaggcacgaaggttgttaaaatatagtgatgacaataataaaggaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35744998 |
gttgaataatgatgatgttaagaattggtgcatgaaacagaaaaggaaggttgaggcacgaaggttgttaaaatatagtgatgacaa--ataaaggaaca |
35744901 |
T |
|
| Q |
201 |
aatagtaatttcctgtgctgccaacatttctattagtggttactaaccgccaacttaattaaagatagcaagctttactcccaaatgagacaagacaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744900 |
aatagtaatttcctgtgctgccaacatttctattagtggttactaaccgccaacttaattaaagatagcaagctttactcccaaatgagacaagacaggt |
35744801 |
T |
|
| Q |
301 |
gaagaacttggtagcctaagccaattaagaatgcaaggaaacaaaaggatttcagcattgctaactaatttatagagtggttcacaaagaataact-tta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
35744800 |
gaagaacttggtagcctaagccaattaagaatgcaaggaaacaaaaggatttcaacattgttaactaatttatagagtggttcacaaagaataactctta |
35744701 |
T |
|
| Q |
400 |
tcagcttcacaattgtcgcaaaggtagcccatggtttgtgtataaggagaagcattcccttatctttgtaatttagcgaggaataaaaatgggttttgta |
499 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744700 |
tcagcttcacaattgtcgcaaaggtagcctatggtttgtgtataaggagaagcattcccttatctttgtaatttagcgaggaataaaaatgggttttgta |
35744601 |
T |
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| Q |
500 |
aatgcattttgaatttccggtgggtttaacaaaattatggtatcacc |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744600 |
aatgcattttgaatttccggtgggtttaacaaaattatggtatcacc |
35744554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 7440946 - 7440891
Alignment:
| Q |
101 |
gttgaataatgatgatgttaagaattggtgcatgaaacagaaaagggaggttgagg |
156 |
Q |
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|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
7440946 |
gttgaataataatgatgttaagaattgttgcataaaacagaaaagggaggttgagg |
7440891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 7439799 - 7439746
Alignment:
| Q |
255 |
ttaattaaagatagcaagctttactcccaaatgagacaagacaggtgaagaact |
308 |
Q |
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|||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
7439799 |
ttaattaaagatagcatgcattactcccaaatgagagaagacaggtgaagaact |
7439746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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