View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21657_high_7 (Length: 575)

Name: NF21657_high_7
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21657_high_7
NF21657_high_7
[»] chr4 (2 HSPs)
chr4 (431-559)||(26897317-26897445)
chr4 (431-559)||(26901779-26901907)
[»] chr5 (2 HSPs)
chr5 (431-559)||(27205730-27205859)
chr5 (431-559)||(27210195-27210324)
[»] chr8 (3 HSPs)
chr8 (449-559)||(24859179-24859289)
chr8 (1-97)||(24859064-24859160)
chr8 (14-97)||(24860109-24860192)
[»] chr3 (8 HSPs)
chr3 (431-559)||(24047105-24047234)
chr3 (431-559)||(23674829-23674958)
chr3 (431-559)||(23679334-23679463)
chr3 (431-559)||(24051571-24051700)
chr3 (9-97)||(21966923-21967011)
chr3 (9-97)||(21989359-21989447)
chr3 (9-57)||(21966697-21966744)
chr3 (9-57)||(21989133-21989180)
[»] chr1 (2 HSPs)
chr1 (431-559)||(26406715-26406844)
chr1 (431-559)||(26411181-26411310)
[»] chr6 (3 HSPs)
chr6 (9-97)||(20487144-20487232)
chr6 (9-97)||(20481771-20481859)
chr6 (381-426)||(20486853-20486898)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 431 - 559
Target Start/End: Complemental strand, 26897445 - 26897317
Alignment:
Q  431 tttgtaatgctaagttgaagaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 530  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897445 tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 26897346  T
Q  531 cgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||||||||||||||||||||||||    
T  26897345 cgtttccactcaaaatcctgcaacagtat 26897317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 431 - 559
Target Start/End: Complemental strand, 26901907 - 26901779
Alignment:
Q  431 tttgtaatgctaagttgaagaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 530  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901907 tttgtaatgctaagttgaagtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtca 26901808  T
Q  531 cgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||||||||||||||||||||||||    
T  26901807 cgtttccactcaaaatcctgcaacagtat 26901779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 431 - 559
Target Start/End: Complemental strand, 27205859 - 27205730
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205859 tttgtaatgctaagttgaacgtaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 27205760  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    ||||||||||||||||||||||||||||||    
T  27205759 acgtttccactcaaaatcctgcaacagtat 27205730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 431 - 559
Target Start/End: Complemental strand, 27210324 - 27210195
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210324 tttgtaatgctaagttgaacgtaagtagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 27210225  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||||||||||||||||||| |||||    
T  27210224 acgtttccactcaaaatcctgcaatagtat 27210195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 449 - 559
Target Start/End: Original strand, 24859179 - 24859289
Alignment:
Q  449 agaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc 548  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859179 agaaagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcc 24859278  T
Q  549 tgcaacagtat 559  Q
    |||||||||||    
T  24859279 tgcaacagtat 24859289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24859064 - 24859160
Alignment:
Q  1 aaaaatttattaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  24859064 aaaaatttattaagaaatgttaagtctcacacatgggcgctgatgtggcgctaatgagttggagaaaagggtttgaggtggcataagttgatctttt 24859160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 24860192 - 24860109
Alignment:
Q  14 gaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24860192 gaaacgttaagtctcacatatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggcataagttgatttttt 24860109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 24047105 - 24047234
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24047105 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 24047204  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||| ||||| |||||||||||||||    
T  24047205 acgtttccgctcaagatcctgcaacagtat 24047234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 23674829 - 23674958
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23674829 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 23674928  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||| | ||||| |||||||||||||||    
T  23674929 acgttttcgctcaagatcctgcaacagtat 23674958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 23679334 - 23679463
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23679334 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 23679433  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||| | ||||| |||||||||||||||    
T  23679434 acgttttcgctcaagatcctgcaacagtat 23679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 24051571 - 24051700
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24051571 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 24051670  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||| | ||||| |||||||||||||||    
T  24051671 acgttttcgctcaagatcctgcaacagtat 24051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 21967011 - 21966923
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21967011 attaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggcataagttgatctttt 21966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 21989447 - 21989359
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21989447 attaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtctgaggtggcataagttgatctttt 21989359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 21966697 - 21966744
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgg 57  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  21966697 attaagaaatgt-aagtctcacacatggtcgctgatgtggcgcttatgg 21966744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 21989133 - 21989180
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgg 57  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  21989133 attaagaaatgt-aagtctcacacatggtcgctgatgtggcgcttatgg 21989180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 26406715 - 26406844
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26406715 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 26406814  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||| ||||| |||||||||||||||    
T  26406815 acgtttccgctcaagatcctgcaacagtat 26406844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 431 - 559
Target Start/End: Original strand, 26411181 - 26411310
Alignment:
Q  431 tttgtaatgctaagttgaa-gaaagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtc 529  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26411181 tttgtaatgctaagttgaaagtaagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtc 26411280  T
Q  530 acgtttccactcaaaatcctgcaacagtat 559  Q
    |||||||| ||||| |||||||||||||||    
T  26411281 acgtttccgctcaagatcctgcaacagtat 26411310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 20487232 - 20487144
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  20487232 attaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgggttggagataagggtatgaggtggcataagttgatctttt 20487144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 20481771 - 20481859
Alignment:
Q  9 attaagaaatgttaagtctcacacatgggcgctgatgtggcgcttatgggttggagaaaagggtctgaggtggcataagttgatctttt 97  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  20481771 attaagaaacgctaagtctcacacatggttgctgatgtggcgcttatgggttggagataagggtctgaggtggcataagttgatttttt 20481859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 20486898 - 20486853
Alignment:
Q  381 atcaggtttgttgttcttcttattcttgtaggccattgctttgtca 426  Q
    |||||||||||||||||| ||||| || ||||||||||||| ||||    
T  20486898 atcaggtttgttgttcttattattattttaggccattgcttcgtca 20486853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University