View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_12 (Length: 460)
Name: NF21657_low_12
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 3982982 - 3982714
Alignment:
| Q |
1 |
gtggccggttactacgaaatagaaacctggttatagcaatcagacataattatcaaaagagtaaataaccggagcgtcgaatattttgggaaaacattaa |
100 |
Q |
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| T |
3982982 |
gtggccggttactacgaaatagaaacctggttatagcaatcagacataattatcaaaagagtaaataaccggagtgtcgaatattttgggaaaacattaa |
3982883 |
T |
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| Q |
101 |
attttgtagcattagtagcaaatttcattgagttcgcttcacagtagaatgattnnnnnnnntacagaa-----tatatagtaattnnnnnnntttgaac |
195 |
Q |
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| T |
3982882 |
attttgtaccattagtagcaaatttcattgagttcgcttcacagtagaatgattaaaaaaaatacagaatatattatatagtaattaaaaaaatttgaac |
3982783 |
T |
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| Q |
196 |
atcaaaggtgcatgtgatctggctggtatcctagtaagaattagggaggaaaagtcaaacacttctgat |
264 |
Q |
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| T |
3982782 |
atcaaaggtgcatgtgatctggctggtatcctagtaagaattagggaggaaaagtcaaacacttctgat |
3982714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 3982717 - 3982636
Alignment:
| Q |
366 |
tgataacagaatcaataaacataaaatgcatttttcacattctgaatcgatccacaaaataattaaatacgagaatgaaact |
447 |
Q |
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| T |
3982717 |
tgataacagaatcaataaacataaaatgcatttttcacattctgaagcaatccacaaaataattaaatacgagaatgaaact |
3982636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 12441202 - 12441250
Alignment:
| Q |
287 |
ggttagttcattttttcaaaattttactggtgtcgacgtgtcagtgttg |
335 |
Q |
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| T |
12441202 |
ggttaattcattttttcaaattttgactggtgtcgatgtgtcagtgttg |
12441250 |
T |
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