View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_14 (Length: 421)
Name: NF21657_low_14
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_14 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 21268071 - 21267684
Alignment:
| Q |
18 |
attgttatggtatttgtgaataaaagagaaattacagtgttgtttatctgattgaactcatcatggggcttacatgttcgagtgagcataaattctaaga |
117 |
Q |
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| T |
21268071 |
attgttatggtatttgtgaataaaagagaaattacagtgttgtttatctgattgaactcat-----ggcttacatgttcgagtgagcataaattctaaga |
21267977 |
T |
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| Q |
118 |
agttacctcgagtgaattgattactgtggaaatttacaactatcannnnnnnnc--agggaatctaaatatacttaggttctcccatgaaaacatgnnnn |
215 |
Q |
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| T |
21267976 |
agttacctcgagtgaattgattattgtggaaatttacaactatcatttttattttgagggaatctaaatatacttagggtctcccatgaaaacatgtttt |
21267877 |
T |
|
| Q |
216 |
nnnnctggccatcttatatacaagataacaaaagtcagaatatgcgaattaacttggttctgatacaaagcaatgccaatgatgcctataacattatcgc |
315 |
Q |
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| T |
21267876 |
ttt-ctggccatcttatatacaagataacaaaagtcagaatatgcgacttaacttggttctgatacaaagcaatgccaatgatgcctataacattatcgc |
21267778 |
T |
|
| Q |
316 |
ttatgacgccaccacaaccaacaactctgtcgatcaccacagctccattacagttaagagccacaaaaccgattgtattggttccttctagtat |
409 |
Q |
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| T |
21267777 |
ttatgacgccaccacagccaacaactctgtcgatcaccacagctccattacagttaagagccacaaaaccggctgtattggttccttctagtat |
21267684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 21257332 - 21257278
Alignment:
| Q |
21 |
gttatggtatttgtgaataaaagagaaattacagtgttgtttatctgattgaact |
75 |
Q |
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| T |
21257332 |
gttatggtatttgtgaataagagtgaaattacaatgttgttaatctgattgaact |
21257278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 21303946 - 21303905
Alignment:
| Q |
343 |
tgtcgatcaccacagctccattacagttaagagccacaaaac |
384 |
Q |
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| T |
21303946 |
tgtcgatcacgacagctccattacagttaagagtcacaaaac |
21303905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 10382 - 10427
Alignment:
| Q |
340 |
ctctgtcgatcaccacagctccattacagttaagagccacaaaacc |
385 |
Q |
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| T |
10382 |
ctctgtcgatcgccacagctccatcgaagttaagagccacaaaacc |
10427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 71680 - 71725
Alignment:
| Q |
340 |
ctctgtcgatcaccacagctccattacagttaagagccacaaaacc |
385 |
Q |
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| T |
71680 |
ctctgtcgatcgccacagctccatcgaagttaagagccacaaaacc |
71725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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