View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_15 (Length: 406)
Name: NF21657_low_15
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 17111280 - 17110925
Alignment:
| Q |
42 |
attagccactaaatgatccattcatgacccaaaatactgatcatacataacccaaaatccaaaatatgcaagtcaaagtaatagtggttatgtatctcta |
141 |
Q |
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| T |
17111280 |
attagccactaaatgatccatacatgacccaaaatactgatcatacatgacccaaaatccaaaatatgcaagtcaaagtaatagtggttatgtatctcta |
17111181 |
T |
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| Q |
142 |
agagttgcaaatattctcatcaaataatttctcggtacatgacacacaatatgaaaccaacacttgaatcagaaccaaaaaccaacacttgaataagcaa |
241 |
Q |
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| T |
17111180 |
agagttgcaaatattctcatcaaataatttctcagtacatgacacacaatatgaaaccaacacttgaatcagaaccaaaaaccaacacttgaataagcaa |
17111081 |
T |
|
| Q |
242 |
aaagttcttcctgtaatgtttaagcaaaccaaagtctcactggatttccttctaacctgtattgcgaaaaaatcaaatggagcattcatcaatcaatatg |
341 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17111080 |
aaagttcttcctgtaatgtttaagcaaaccaaactctcactggatttccttctaacctgtattgcgaaaaaatcaaatggagcattcatcaatcaatatg |
17110981 |
T |
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| Q |
342 |
aaatagcttatgcatgccttctaattctgaaataatcacatcatgaagagaataat |
397 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17110980 |
aaatagcttatgcatgccttttaattctgaaataatcacatcatgaagagaataat |
17110925 |
T |
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