View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_17 (Length: 400)
Name: NF21657_low_17
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 9605154 - 9605356
Alignment:
| Q |
18 |
ctatataatgctaggcatatgcaatcaatacaatcaactttggtatataatgactcaaagatagcctatataaatgaagaagaatcaataatgatttttg |
117 |
Q |
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| T |
9605154 |
ctatataatgctaggcatatgcaatcaatacaaacaactttggtatata-tgactcaaagatagcctatataaatgaagaagaatcaataatgatttttg |
9605252 |
T |
|
| Q |
118 |
catgttagcatcaatacagctccacactacatgtaaattttatttgaatttcactaacaaatgtcttcgaagaactcttgaaatattcaaaagtaaaaat |
217 |
Q |
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|||||||||||||| | ||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| |
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| T |
9605253 |
catgttagcatcaacagagctccacatcacatgtaaattttatttgaatttcactgacgaaagtcttcgaagaactctttaaatattcaaaagtgaaaat |
9605352 |
T |
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| Q |
218 |
tatt |
221 |
Q |
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|||| |
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| T |
9605353 |
tatt |
9605356 |
T |
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