View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_20 (Length: 305)
Name: NF21657_low_20
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 43156139 - 43156405
Alignment:
| Q |
23 |
ataatttaactagagaatcggtcaaaacacaaagatcacaagcaaaaaggaaataggtcaaaacacaaagatcacaagtt-ctcaactagagaataatca |
121 |
Q |
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| T |
43156139 |
ataattgaactagagaatagatcaaaacacaaagatcacaagcaaaaaggaaataggtcaaaacacaaagatcacaagttactcaactagagaataatca |
43156238 |
T |
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| Q |
122 |
acttgagacggtagatgtctaaaataccaattgaacttgacgaaatttgttccatgaggaggtgttggaagtgtaatgcatttttgcaatttttctttct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43156239 |
acttgagacggtagatgtctaaaataccaattgaacttgacgaaatttgttccacgaggaggtgttggaagtgtaatgcatttttgcaatttttctttct |
43156338 |
T |
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| Q |
222 |
catcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatc |
290 |
Q |
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| T |
43156339 |
cttcccatgaat--acacaacattttgtagaaaaaagactcatgacatacatagagttactctcatatc |
43156405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 103 - 290
Target Start/End: Complemental strand, 31266961 - 31266775
Alignment:
| Q |
103 |
ctcaactagagaataatcaacttgagacggtagatgtctaaaataccaattgaacttgacgaaatttgttccatgaggaggtgttggaagtgtaatgcat |
202 |
Q |
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| T |
31266961 |
ctcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggag---ttggaagtgtaatgcat |
31266865 |
T |
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| Q |
203 |
ttttgcaatttttctttctcatcccatgaatacacacaacattttgt--agaaaaaagaccgatgacatacatagagttactctcatatc |
290 |
Q |
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| T |
31266864 |
ttttgcaattttattttatcatcccctgaatagacattgcattttgttgaaaaaaaaaactgctgacatacatagagttgctctcatatc |
31266775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 43156072 - 43156112
Alignment:
| Q |
61 |
caagcaaaaaggaaataggtcaaaacacaaagatcacaagt |
101 |
Q |
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| T |
43156072 |
caagcaaaaaggaaataggtcaaaacacaaagatcacaagt |
43156112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 14964387 - 14964287
Alignment:
| Q |
187 |
tggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctca |
286 |
Q |
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| T |
14964387 |
tggaagcgtaatgcatttttgcaattgtt---tatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttca |
14964291 |
T |
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| Q |
287 |
tatc |
290 |
Q |
| |
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|||| |
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|
| T |
14964290 |
tatc |
14964287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 290
Target Start/End: Complemental strand, 48179526 - 48179345
Alignment:
| Q |
103 |
ctcaactagagaataatcaacttgagacggtagatgtctaaaataccaattgaacttgacgaaatttgttccatgaggaggtgttggaagtgtaatgcat |
202 |
Q |
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|||||||||||||||||| |||| | | || |||| |||||| |||||| | || || | || ||||||||||| || | |||||| ||||||||| |
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| T |
48179526 |
ctcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaaga---gctggaagcgtaatgcat |
48179430 |
T |
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| Q |
203 |
ttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatc |
290 |
Q |
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||||||||||| ||| ||||| | ||||||||||| ||| || ||| |||| |||||||||||||| |||||| |||||||||| |
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| T |
48179429 |
ttttgcaattt---tttatcatctcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatc |
48179345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 45196850 - 45196752
Alignment:
| Q |
189 |
gaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcata |
288 |
Q |
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|||||||||||| |||||||||||| ||| |||| || ||||||| ||| |||| ||||||| |||||| |||| |||||||||| || | |||||| |
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| T |
45196850 |
gaagtgtaatgcttttttgcaattt---tttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcata |
45196754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 49540557 - 49540618
Alignment:
| Q |
229 |
tgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatc |
290 |
Q |
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||||||||||| |||| ||||||| ||||| |||||||||||||||||| ||||| |||| |
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| T |
49540557 |
tgaatacacactacatattgtagatccaagacggatgacatacatagagttgctctcgtatc |
49540618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 41186241 - 41186205
Alignment:
| Q |
65 |
caaaaaggaaataggtcaaaacacaaagatcacaagt |
101 |
Q |
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||||||||||||| |||||||||||||||||| |||| |
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| T |
41186241 |
caaaaaggaaatatgtcaaaacacaaagatcaaaagt |
41186205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 32347371 - 32347428
Alignment:
| Q |
104 |
tcaactagagaataatcaacttgagacggtagatgtctaaaataccaattgaacttga |
161 |
Q |
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||||||||||||||||| |||| ||| |||||||||||||| |||||| |||||||| |
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| T |
32347371 |
tcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttga |
32347428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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