View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21657_low_21 (Length: 295)

Name: NF21657_low_21
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21657_low_21
NF21657_low_21
[»] chr2 (11 HSPs)
chr2 (54-286)||(9031608-9031840)
chr2 (54-187)||(9026440-9026573)
chr2 (54-187)||(9020510-9020643)
chr2 (54-187)||(8988101-8988230)
chr2 (54-122)||(8991885-8991953)
chr2 (54-122)||(8973048-8973116)
chr2 (54-122)||(9023140-9023208)
chr2 (235-286)||(8989751-8989802)
chr2 (129-187)||(8996034-8996092)
chr2 (235-275)||(9002159-9002199)
chr2 (66-101)||(8996098-8996133)
[»] chr1 (1 HSPs)
chr1 (54-187)||(33987718-33987850)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 286
Target Start/End: Complemental strand, 9031840 - 9031608
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaaattgctaaggctattatatctttcatctttg 153  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9031840 attcttgtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttg 9031741  T
Q  154 tgttcattcatttgtttttgagtgccactgttgttcagtaataatatgacaacatatatctaataggattcggagctccataagcatatatgaacgatga 253  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9031740 tgttcattcatttgtttttgagtgccactgttgttcagtaattatatgccaacatatatctaataggattcggagctccataagcatatatgaacgatga 9031641  T
Q  254 atggatgaaaaggaaactatataatagtataat 286  Q
    |||||||||||||||||||||||||||||||||    
T  9031640 atggatgaaaaggaaactatataatagtataat 9031608  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 9026573 - 9026440
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaaattgctaaggctattatatctttcatctttg 153  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9026573 attcttgtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttg 9026474  T
Q  154 tgttcattcatttgtttttgagtgccactgttgt 187  Q
    ||||||||||||||||||||||||||||||||||    
T  9026473 tgttcattcatttgtttttgagtgccactgttgt 9026440  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 9020643 - 9020510
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaaattgctaaggctattatatctttcatctttg 153  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  9020643 attctcgtcttaaagcaaaatatcatgatcggattcttatcttattccttgcttttgttgatgggctaaccggctaagggtattatatctttcatctttg 9020544  T
Q  154 tgttcattcatttgtttttgagtgccactgttgt 187  Q
    ||||||||||||||||||||||||||||| ||||    
T  9020543 tgttcattcatttgtttttgagtgccactattgt 9020510  T

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Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 8988230 - 8988101
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaaattgctaaggctattatatctttcatctttg 153  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  8988230 attcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatctttg 8988131  T
Q  154 tgttcattcatttgtttttgagtgccactgttgt 187  Q
    |||||||||    ||||||||| |||||||||||    
T  8988130 tgttcattc----gtttttgagagccactgttgt 8988101  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 8991953 - 8991885
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaa 122  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  8991953 attcttgtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgataggctaa 8991885  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 8973116 - 8973048
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaa 122  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  8973116 attcttgtcttgaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgataggctaa 8973048  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 9023208 - 9023140
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaa 122  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9023208 attcttgacttaaagcaaagtatcatgatctgattcttatcttatcccttgcttttgttgatgggctaa 9023140  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 8989802 - 8989751
Alignment:
Q  235 aagcatatatgaacgatgaatggatgaaaaggaaactatataatagtataat 286  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8989802 aagcatatatgaatgatgaatggatgaaaaggaaactatataatagtataat 8989751  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 8996092 - 8996034
Alignment:
Q  129 aaggctattatatctttcatctttgtgttcattcatttgtttttgagtgccactgttgt 187  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  8996092 aaggttattatatctttcatctttgtgttctttcatttgtttttgagtgccacagttgt 8996034  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 9002199 - 9002159
Alignment:
Q  235 aagcatatatgaacgatgaatggatgaaaaggaaactatat 275  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  9002199 aagcataaatgaatgatgaatggatgaaaaggaaactatat 9002159  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 8996133 - 8996098
Alignment:
Q  66 aagcaaaatattatgatctgattcttatcttatccc 101  Q
    |||||||||||||||||||||||| |||||||||||    
T  8996133 aagcaaaatattatgatctgattcgtatcttatccc 8996098  T

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Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 33987850 - 33987718
Alignment:
Q  54 attcttgtcttaaagcaaaatattatgatctgattcttatcttatcccttgcttttgttgatgggctaaattgctaaggctattatatctttcatctttg 153  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||   | ||||||||||||||||||||||||||    
T  33987850 attcttgtcttacagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatggactaaccgggtaaggctattatatctttcatctttg 33987751  T
Q  154 tgttcattcatttgtttttgagtgccactgttgt 187  Q
    |||||||||||||| ||||||||||||| |||||    
T  33987750 tgttcattcatttg-ttttgagtgccacagttgt 33987718  T

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