View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_24 (Length: 271)
Name: NF21657_low_24
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 43155532 - 43155791
Alignment:
| Q |
14 |
cacagaaattacttggaaaatgtctctcacaattttgatgactttgattggaggacaatatcccaagtcagtcaactagctttttgaatcatttaattaa |
113 |
Q |
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| T |
43155532 |
cacagaaattacttggaaaatgtctctcacaattttgatgactttgattgggggacaatatcccaagtcagtcaactagcttttttaatcatttaattaa |
43155631 |
T |
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| Q |
114 |
ataaggaagttaaaatttcaacaacgcgtgaaaagttttaaaatagcaaactcattgtaactaccaaattgta--ttcactaatcaatctattaggcaaa |
211 |
Q |
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| T |
43155632 |
aaaaggaagttaaaatttcaacaacgcgtgaaaagttttaaaacagcaaactcattgtaacttaccaattgtattttcactaatcaatctattaggcaaa |
43155731 |
T |
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| Q |
212 |
ctaaaataagcctaaacatgtgtgtttttctaagatcttctgttcatggtttgcctctta |
271 |
Q |
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| T |
43155732 |
ctaaaattagcctaaaaatgtgtgtttttctaagatcttctgttcatggtttgcctctta |
43155791 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 23913529 - 23913463
Alignment:
| Q |
114 |
ataaggaagttaaaatttcaacaacgcgtgaaaagttttaaaatagcaaactcattgtaactaccaa |
180 |
Q |
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| T |
23913529 |
ataaggaagttgagatttcaactgcgcgtgaaaagtttttaaatagaaaattcattgtaactaccaa |
23913463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 23913426 - 23913349
Alignment:
| Q |
190 |
actaatcaatctattaggcaaactaaaataagcctaaacatgtgtgtttttctaaga-tcttctgttcatggtttgcct |
267 |
Q |
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| T |
23913426 |
actattcaatctattaagcaaactaaaacttgcctaaacatgtgtg-ctttccaagagtcttttgttcatggtttgcct |
23913349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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