View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21657_low_3 (Length: 754)

Name: NF21657_low_3
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21657_low_3
NF21657_low_3
[»] chr4 (8 HSPs)
chr4 (233-736)||(2838255-2838743)
chr4 (12-207)||(2838039-2838232)
chr4 (480-540)||(2842513-2842573)
chr4 (676-736)||(2842784-2842844)
chr4 (270-315)||(52735150-52735195)
chr4 (638-672)||(2842671-2842705)
chr4 (270-315)||(6428046-6428092)
chr4 (269-345)||(27123318-27123395)
[»] chr6 (4 HSPs)
chr6 (266-345)||(281814-281894)
chr6 (270-341)||(9027606-9027678)
chr6 (269-345)||(2460117-2460194)
chr6 (269-345)||(32386529-32386606)
[»] chr3 (3 HSPs)
chr3 (267-345)||(11039305-11039384)
chr3 (269-345)||(37273161-37273238)
chr3 (269-345)||(43115083-43115160)
[»] chr2 (3 HSPs)
chr2 (272-345)||(11063518-11063592)
chr2 (266-315)||(30552639-30552690)
chr2 (268-345)||(17221506-17221584)
[»] chr5 (2 HSPs)
chr5 (304-345)||(35095752-35095793)
chr5 (269-345)||(30217109-30217185)
[»] chr7 (1 HSPs)
chr7 (263-332)||(33645940-33646010)
[»] chr1 (1 HSPs)
chr1 (275-328)||(30418165-30418218)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 233 - 736
Target Start/End: Original strand, 2838255 - 2838743
Alignment:
Q  233 gtcaaattgttttctataagctataaggtgtatctagagagcttatggaaataagcttaaataacttattgacatgtcataagatacttccataagctct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2838255 gtcaaattgttttctataagctataaggtgtatctagagagcttatggaaataagctgaaataacttattgacatgtcataagatacttccataagctct 2838354  T
Q  333 tgcaaacagtctccagtctcataagttcttatgaaaataaataagatcaaataaatcaatccagacacgaagaatcacattcagaatcgaggcaaagatt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2838355 tgcaaacagtctccagtctcataagttcttatgaaaataaataagatcaaataaatcattccaaacacgaagaatcacattcagaatcgaggcaaagatt 2838454  T
Q  433 tgcattttgagtttgcacctggacaacttgcgagttcaatgttgtcatcaataacatggacatcaagaacatcagactcagtatcataaaaggatctatg 532  Q
    ||||||||||||||||||||||||||| |||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  2838455 tgcattttgagtttgcacctggacaacctgcgagttcaatgttgt---------------catcaagaacatcagactcagtatcataaaaggatctatg 2838539  T
Q  533 catatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtctgcatcagcgcaatctttcttcacatttgatacgatgctt 632  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838540 catatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtctgcatcagcgcaatctttcttcacatttgatacgatgctt 2838639  T
Q  633 tctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataa 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2838640 tctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataa 2838739  T

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Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 2838039 - 2838232
Alignment:
Q  12 agtgagatgaaggttgcatagcatggttcaattagtttatagttttgtgtttgttatattaagcaaattaattaaattaatgtagttaataagtttgttt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838039 agtgaaatgaaggttgcatagcatggttcaattagtttatagttttgtgtttgttatattaagcaaattaattaaattaatgtagttaataagtttgttt 2838138  T
Q  112 attggtgttagtcttgtgaggaataatatgcaaaaactcttgtatttggaataaactcaataaattaagatgtgatgagagattatcttagtcacc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  2838139 attggtgttagtcttgtgaggaataatatgcaaaaactcttgtatttggaataaactcaataaattaagatgtga--agagattatcttagtcacc 2838232  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 2842513 - 2842573
Alignment:
Q  480 tcaataacatggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat 540  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2842513 tcaataacgtggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat 2842573  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 736
Target Start/End: Original strand, 2842784 - 2842844
Alignment:
Q  676 gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaat 736  Q
    ||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  2842784 gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaat 2842844  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 52735150 - 52735195
Alignment:
Q  270 agagcttatggaaataagcttaaataacttattgacatgtcataag 315  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  52735150 agagcttatggaaataagctaaaataacatatggacatgtcataag 52735195  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 672
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
Q  638 ctgtgatggatcatcacaagtttcaaatgaaagtg 672  Q
    |||||||||||||||||| ||||||||||||||||    
T  2842671 ctgtgatggatcatcacatgtttcaaatgaaagtg 2842705  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 6428046 - 6428092
Alignment:
Q  270 agagcttatggaaataagcttaaat-aacttattgacatgtcataag 315  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  6428046 agagcttatggaaatatgcttaaatcaacttatggacatgtcataag 6428092  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 27123395 - 27123318
Alignment:
Q  269 gagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    ||||||||||||||||||| | |||  ||||||  ||||||||||||| |  |||||||||||||  |||||||||||    
T  27123395 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctc 27123318  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 281894 - 281814
Alignment:
Q  266 ctagagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||||||||| ||||||||||||| |||  ||||||| ||||||||||||| | ||||||| ||||||  |||||||||||    
T  281894 ctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctc 281814  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 9027606 - 9027678
Alignment:
Q  270 agagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacag 341  Q
    |||||||||| ||||||||| |||  ||||||| ||||||||||||| || |||||||||||||| |||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaacag 9027678  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 2460194 - 2460117
Alignment:
Q  269 gagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    ||||||||||||||||||| | |||  ||||||  ||||||||||||| |  |||||||||||||  |||||||||||    
T  2460194 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctc 2460117  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 32386606 - 32386529
Alignment:
Q  269 gagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    ||||||||||| ||||||||| |||  || || | ||||||| |||||||| |||||||||||||| ||||| |||||    
T  32386606 gagagcttatgaaaataagctgaaaacaagttgtggacatgttataagatatttccataagctctttcaaacggtctc 32386529  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 11039384 - 11039305
Alignment:
Q  267 tagagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||| |||||||||| ||||||| |||  ||||||| |||||||||||| ||  |||||||||||||| |||||||||||    
T  11039384 tagatagcttatggagataagctgaaaacaacttatggacatgtcataatatgtttccataagctctttcaaacagtctc 11039305  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 37273161 - 37273238
Alignment:
Q  269 gagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||| |||||||||||||| | |||  ||||||| ||||||||||||| |  |||||||||||||  |||||||||||    
T  37273161 gagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctc 37273238  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 43115083 - 43115160
Alignment:
Q  269 gagagcttatggaaataagct-taaataacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||||||||||||||||||||  ||| || |||| ||||||||||||| |  |||||||| ||||| |||||| ||||    
T  43115083 gagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctc 43115160  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 11063518 - 11063592
Alignment:
Q  272 agcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||||||| ||||||||| |||  ||||||| |||||||||||| ||  |||||||||||||| |||||||||||    
T  11063518 agcttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaacagtctc 11063592  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 30552690 - 30552639
Alignment:
Q  266 ctagagagcttatggaaataagcttaaa--taacttattgacatgtcataag 315  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  30552690 ctagagagcttatggaaataagctaaaaaccaacttattgacatgtcataag 30552639  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 17221584 - 17221506
Alignment:
Q  268 agagagcttatggaaataagcttaaataactt-attgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    ||||| |||| ||||||||||| ||| || || || || ||||||||||||| |||||||||||||| | |||||||||    
T  17221584 agagatcttacggaaataagctaaaaaaagtttatggatatgtcataagatatttccataagctcttccgaacagtctc 17221506  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 35095793 - 35095752
Alignment:
Q  304 acatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  35095793 acatgtcataagatatttccataagctcttccaaacagtctc 35095752  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 30217109 - 30217185
Alignment:
Q  269 gagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctcttgcaaacagtctc 345  Q
    |||||||||||||||||| | ||||  ||||||| |||||| ||||||||| |||||||||||||   ||||||||||    
T  30217109 gagagcttatggaaataaacctaaaacaacttatggacatg-cataagataattccataagctctcctaaacagtctc 30217185  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 33646010 - 33645940
Alignment:
Q  263 tatctagagagcttatggaaataagcttaaat-aacttattgacatgtcataagatacttccataagctct 332  Q
    ||||| |||||||||||||||||| || |||  ||||||| ||||||||||||| |  |||||||||||||    
T  33646010 tatctggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctct 33645940  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 30418218 - 30418165
Alignment:
Q  275 ttatggaaataagcttaaataacttattgacatgtcataagatacttccataag 328  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |  |||||||||    
T  30418218 ttatggaaaaaagctgaaataacttatggacatgtcataagttgtttccataag 30418165  T

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