View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_30 (Length: 250)
Name: NF21657_low_30
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4281775 - 4282008
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281775 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
4281874 |
T |
|
| Q |
101 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281875 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaattacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
4281974 |
T |
|
| Q |
201 |
aattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
4281975 |
aattaagaatttcactccaatagagggataagaa |
4282008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19807374 - 19807607
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19807374 |
ctagtattagattaaatattgggcattgtatatcaagtaaataataatcttgctttagttgagcgagttaaaaactagtagcgtaacttaaactttatga |
19807473 |
T |
|
| Q |
101 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19807474 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaattacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttatc |
19807573 |
T |
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| Q |
201 |
aattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
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||||||||||||||| |||||||||||| ||||| |
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| T |
19807574 |
aattaagaatttcaccccaatagagggacaagaa |
19807607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 12208164 - 12208275
Alignment:
| Q |
123 |
aagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtcaattaagaatttcactccaata |
222 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
12208164 |
aagcatgcgatgaataaattacgaaagcatctgtatatgcacatagtcaaataaatgccagagaacactatgtttgtcaattaagaattttactcaaata |
12208263 |
T |
|
| Q |
223 |
gagggataagaa |
234 |
Q |
| |
|
|||||||||||| |
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| T |
12208264 |
gagggataagaa |
12208275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18974329 - 18974096
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18974329 |
ctagtattagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagcgagttaaaaactagtagcgtaacttaaactttatga |
18974230 |
T |
|
| Q |
101 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18974229 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaattacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttatc |
18974130 |
T |
|
| Q |
201 |
aattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
|
||||||||||| ||| |||| ||||||| ||||| |
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|
| T |
18974129 |
aattaagaattccaccccaaaagagggacaagaa |
18974096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31710088 - 31709857
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
31710088 |
ctagtagtagattaaatattgggcattgtatatcacgtaaacaataatcttgctttagttgagtgagttaaaaactaatagcgtaacttaaactt-atga |
31709990 |
T |
|
| Q |
101 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
31709989 |
tacatgtgcagttaaaaa-cccaagcatgcgatgaataaattacgaaagcatctgtatatgcacatagtcaaataaatgccagagaacacaatgtttgtc |
31709891 |
T |
|
| Q |
201 |
aattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
31709890 |
aattaagaattttactccaatagagggataagaa |
31709857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14674482 - 14674323
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaactt-aaactttatg |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || |||||| ||| |
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|
| T |
14674482 |
ctagtagtagattaaatattgggcattacgtatcacgtaaacaataatctcgctttagttgagtgagttaaaaactagtagtgtaagttaaaacttaatg |
14674383 |
T |
|
| Q |
100 |
acacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatat |
160 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14674382 |
acacatgtgcagtt-aaaaacccaagcatgcgatgaataatttacgaaagcatctgtatat |
14674323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 14674272 - 14674205
Alignment:
| Q |
167 |
agtcaaataaatgccagagaacactatgtttgtcaattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14674272 |
agtcaaataaatgccagagaacactatgtttgtcaattaagaattttactccaatagagggataagaa |
14674205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5331545 - 5331778
Alignment:
| Q |
1 |
ctagtagtagattaaatattgggcattgtatatcacgtaaataataatcttgctttagttgagtgagttaaaaactagtagcgtaacttaaactttatga |
100 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
5331545 |
ctagtattagattaaatatggggcattgtatatcacgtaaataataatcttgctttagttgagcgagttaaaaactagtagcgtaacttaaactttatga |
5331644 |
T |
|
| Q |
101 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaactacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
5331645 |
cacatgtgcaattaaaaaacccaagcatgcgatgaataaattacgaaagcatctgtatatgcatatagtcaaataaatgccagagaacactatgtttatc |
5331744 |
T |
|
| Q |
201 |
aattaagaatttcactccaatagagggataagaa |
234 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
5331745 |
aattaagaatttcaccccaaaagagggacaagaa |
5331778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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