View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21657_low_31 (Length: 249)

Name: NF21657_low_31
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21657_low_31
NF21657_low_31
[»] chr6 (4 HSPs)
chr6 (140-235)||(32618145-32618241)
chr6 (7-73)||(14604550-14604616)
chr6 (140-194)||(14604684-14604738)
chr6 (14-74)||(32618305-32618365)
[»] chr4 (1 HSPs)
chr4 (140-223)||(51270946-51271030)
[»] chr1 (1 HSPs)
chr1 (140-202)||(22774461-22774523)
[»] scaffold0153 (1 HSPs)
scaffold0153 (140-192)||(36137-36189)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 32618241 - 32618145
Alignment:
Q  140 ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttag-ttagttttataatacaatatcgta 235  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  32618241 ctatgagttttgtttatggcaggggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagttttataatataatatcgta 32618145  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 14604550 - 14604616
Alignment:
Q  7 tacattattctatctttttggttatgaactttcttacttacgatcattgttaatctctctatagctt 73  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  14604550 tacattcttctatctttttggttatgaaccttcttacttacaatcgttgttaatctctctatagctt 14604616  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 14604684 - 14604738
Alignment:
Q  140 ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcct 194  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  14604684 ctatgaattttgtttatggtatgggagtttaatttgtttgtgaatgaagatgcct 14604738  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 32618365 - 32618305
Alignment:
Q  14 ttctatctttttggttatgaactttcttacttacgatcattgttaatctctctatagcttc 74  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  32618365 ttctatcttttttgttatgaaccttcttacttacaatcgttgttaatctctctatagcttc 32618305  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 51271030 - 51270946
Alignment:
Q  140 ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttag-ttagttttataa 223  Q
    |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  51271030 ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattttgatgttagtttagttttataa 51270946  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 22774523 - 22774461
Alignment:
Q  140 ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattt 202  Q
    |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  22774523 ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattt 22774461  T

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Target: scaffold0153 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 36137 - 36189
Alignment:
Q  140 ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgc 192  Q
    |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||    
T  36137 ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgc 36189  T

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