View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_32 (Length: 246)
Name: NF21657_low_32
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3593911 - 3593682
Alignment:
| Q |
1 |
tgtcccaattctaatcaaaatgctctcagttgtgtttgttacattgaacaccaccggtgctatatgtcttcatttcattgaaaaaataaataaagatgga |
100 |
Q |
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| T |
3593911 |
tgtcccaattctaatcaaaatgctctcagttgtgtttgttacattgaacaccaccggtgctatatgtcttcatttcattaaaaaaagaaataaagatgga |
3593812 |
T |
|
| Q |
101 |
aagttaagcaaaggatgcatggttcggtatttgatagaatgaattattggaccaagaaatttccaatttcgcgctgtaccatatcatcatatcattctgc |
200 |
Q |
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| T |
3593811 |
aagttaagcaaaggatgcatggttcggtatttgatagaatgaattattggaccaagaaatttccaatttctcgctgtaccatatcatgatatcattctgc |
3593712 |
T |
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| Q |
201 |
taatacacactgcagtttagacaagaattc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3593711 |
taatacacactgcagtttagacaagaattc |
3593682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 3589107 - 3589022
Alignment:
| Q |
145 |
tattggaccaagaaatttccaatttcgcgctgtaccatatcatcatatcattctgctaatacacactgcagtttagacaagaattc |
230 |
Q |
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| T |
3589107 |
tattggaccaagaaatttccaatttcgcgctgtaccatatcatgatatcattctgctaatacacactgcagtttagacaagaattc |
3589022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3589145 - 3589103
Alignment:
| Q |
4 |
cccaattctaatcaaaatgctctcagttgtgtttgttacattg |
46 |
Q |
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| T |
3589145 |
cccaattctaatcaaaatgctctcagttgtgtttcttatattg |
3589103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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